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Update "update request" etl job #387

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allanbolipata opened this issue Jun 16, 2020 · 2 comments
Closed
1 task done

Update "update request" etl job #387

allanbolipata opened this issue Jun 16, 2020 · 2 comments
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@allanbolipata
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allanbolipata commented Jun 16, 2020

We have to discuss what this etl job needs to do since it has been left unattended.

For now, it needs to do the following:

  • Needs to be able to handle adding fastqs to previously imported request (assumption: data is re-delivered on IGOLIMS and shows up in the usual endpoint)
@allanbolipata allanbolipata added this to the 1.8.0 milestone Jun 16, 2020
@allanbolipata
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This happened as recently as June 19: request 10848_B got new fastqs.

Voyager has two samples from this request, with each sample containing two fastqs. On IGOLIMS, 10848_B_3 itself has six fastqs.

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allanbolipata commented Jun 30, 2020

We will need to add logic for processing re-deliveries, create new ticket and process them automatically

Also notify CAS that a re-delivery has happened

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