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Update operators so that CN and PL assignment isn't hardcoded #89

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allanbolipata opened this issue Jan 13, 2020 · 2 comments
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Update operators so that CN and PL assignment isn't hardcoded #89

allanbolipata opened this issue Jan 13, 2020 · 2 comments
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@sivkovic @allanbolipata
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1.9.0

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https://github.com/mskcc/beagle/blob/develop/runner/operator/roslin_operator/bin/make_sample.py#L80-L81

In the operator, change these so that they are assigned through the fields "sequencingCenter" and "platform" once they've been added; see #88

Also apply to other operators.
@allanbolipata allanbolipata self-assigned this Jan 30, 2020
@allanbolipata allanbolipata added this to the 1.6.0 milestone May 29, 2020
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Add sequencing center and platform values to LIMS ETL module

@allanbolipata allanbolipata modified the milestones: 1.6.0, 1.7.0 Jun 2, 2020
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Pushing to 1.7.0; should be easily doable for next sprint.

@allanbolipata allanbolipata modified the milestones: 1.7.0, 1.8.0 Jun 4, 2020
@allanbolipata allanbolipata modified the milestones: 1.8.0, 1.9.0 Jun 23, 2020
@nikhil nikhil mentioned this issue Jul 1, 2020
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@nikhil nikhil closed this as completed Jul 1, 2020
@nikhil nikhil mentioned this issue Jul 1, 2020
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