python-package.yml

name: Python package

on: [push, pull_request]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.8', '3.10']

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - uses: actions/cache@v2
      with:
        path: |
          ~/.cache/pip
          ${{ env.pythonLocation }}/bin/*
          ${{ env.pythonLocation }}/include
          ${{ env.pythonLocation }}/lib/python*/site-packages/*
          !${{ env.pythonLocation }}/bin/pip*
          !${{ env.pythonLocation }}/lib/python*/site-packages/pip*
          !${{ env.pythonLocation }}/lib/python*/site-packages/setuptools*
        key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements.txt') }}
    - name: Install CXX Dependencies
      run: sudo apt-get update && sudo apt-get install -yq gfortran libboost-dev libboost-serialization-dev liblapack-dev
    - name: Install MongoDB
      uses: supercharge/mongodb-github-action@1.3.0
    - name: Install Python Dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install --upgrade --upgrade-strategy eager pytest pytest-cov 
        if [ -f requirements.txt ]; then pip install --upgrade --upgrade-strategy eager -r requirements.txt; fi
    - name: Install Apache Spark
      run: |
        mkdir -p /opt
        wget -q -O /opt/spark.tgz https://archive.apache.org/dist/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz
        tar xzf /opt/spark.tgz -C /opt/
        rm /opt/spark.tgz
        export SPARK_HOME=/opt/spark-3.0.0-bin-hadoop2.7
        echo "SPARK_HOME=/opt/spark-3.0.0-bin-hadoop2.7" >> $GITHUB_ENV
        export PATH=$PATH:/opt/spark-3.0.0-bin-hadoop2.7/bin
        echo "/opt/spark-3.0.0-bin-hadoop2.7/bin" >> $GITHUB_PATH
        python -m pip install --upgrade --upgrade-strategy eager pyspark pytest-spark
    - name: Install
      run: python -m pip install -C--global-option=build -C--global-option=--debug -v .
    - name: Test with pytest
      run: |
        export MSPASS_HOME=$(pwd)
        export SPARK_LOCAL_IP=127.0.0.1
        pytest --cov=mspasspy python/tests/
        make test -C build/temp.*/
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v4
      with:
        fail_ci_if_error: false 
        token: ${{ secrets.CODECOV_TOKEN }} # required
        env_vars: OS,PYTHON
        verbose: true
    - name: Build Documentation
      if: ${{ matrix.python-version == '3.8' }}
      run: |
        export MSPASS_HOME=$(pwd)
        sudo apt-get update && sudo apt-get install -yq doxygen pandoc
        pip install -r docs/requirements.txt
        cd docs 
        ls
        make html
    - name: Deploy to GitHub Pages 
      if: ${{ github.ref == 'refs/heads/master' && matrix.python-version == '3.8' }}
      uses: JamesIves/github-pages-deploy-action@3.7.1
      with:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        BRANCH: gh-pages 
        FOLDER: docs/build/html 
        CLEAN: false