- fix a bug in
get_cscg
that caused an error when the input codon frequency matrix has a single row. - finish unit tests for all functions and internal data.
- fixed a bug in
est_trna_weight
. Now zero w values were replaced with geometric mean (rather than the arithmetic mean) of non-zero w values. - fixed unexpected warnings in
est_optimal_codons
. - fixed bugs that update input codon table due to
data.table
reference semantics. - added a new vignette explaining the mathematical details of implementation.
- adjust formatting
- fix a typo in
get_enc
code
- New vignette for mitochondrial codon usage analysis.
- Fix a bug when in
get_enc
for non-standard genetic code.
- Released to CRAN.
- Initial CRAN submission.