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e_coli_core.xml
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e_coli_core.xml
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<?xml version='1.0' encoding='UTF-8'?>
<sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1" sboTerm="SBO:0000624" fbc:required="false">
<model fbc:strict="true" id="e_coli_core">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3" multiplier="1" exponent="1"/>
<unit kind="gram" scale="0" multiplier="1" exponent="-1"/>
<unit kind="second" scale="0" multiplier="3600" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<fbc:listOfObjectives fbc:activeObjective="obj">
<fbc:objective fbc:id="obj" fbc:type="maximize">
<fbc:listOfFluxObjectives>
<fbc:fluxObjective fbc:reaction="R_BIOMASS_Ecoli_core_w_GAM" fbc:coefficient="1"/>
</fbc:listOfFluxObjectives>
</fbc:objective>
</fbc:listOfObjectives>
<listOfParameters>
<parameter value="-1000" id="cobra_default_lb" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/>
<parameter value="1000" id="cobra_default_ub" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/>
<parameter value="0" id="cobra_0_bound" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/>
<parameter id="R_ATPM_lower_bound" value="8.39" sboTerm="SBO:0000625" constant="true" units="mmol_per_gDW_per_hr"/>
<parameter id="R_EX_glc__D_e_lower_bound" value="-10" sboTerm="SBO:0000625" constant="true" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
<listOfCompartments>
<compartment id="e" name="extracellular space" constant="true"/>
<compartment id="c" name="cytosol" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species id="M_glc__D_e" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="D-Glucose" metaid="M_glc__D_e" sboTerm="SBO:0000247" compartment="e" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
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</species>
<species id="M_gln__L_c" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="L-Glutamine" metaid="M_gln__L_c" sboTerm="SBO:0000247" compartment="c" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
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<species id="M_glu__L_c" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="L-Glutamate" metaid="M_glu__L_c" sboTerm="SBO:0000247" compartment="c" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
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