Please, in case you use SIMONA use the follwing cite:
Strunk, T., Wolf, M., Brieg, M., Klenin, K., Biewer, A., Tristram, F., ... & Wenzel, W. (2012). SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems. Journal of computational chemistry, 33(32), 2602-2613.
or use the following BibTex code:
@article{strunk2012simona,title={SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems},
author={Strunk, Timo and Wolf, Moritz and Brieg, Martin and Klenin, K and Biewer, A and Tristram, Frank and Ernst, M and Kleine, PJ and Heilmann, N and Kondov, Ivan and others},
journal={Journal of computational chemistry},
volume={33}, number={32},
pages={2602--2613}, year={2012},
publisher={Wiley Online Library}}- (2022). Modelling peptide adsorption energies on gold surfaces with an effective implicit solvent and surface model
- (2021). Monte-Carlo Simulations of Soft Matter using SIMONA: A review of recent applications
- (2020). Sampling of the conformational landscape of small proteins with Monte Carlo methods
- (2020). Tacticity dependence of single chain polymer folding
- (2019). Rational Design of Iron Oxide Binding Peptide Tags
- (2015). Modelling of reversible single chain polymer self-assembly: from the polymer towards the protein limit
- (2012). SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems