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Anatomical processing planning #152

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mwaskom opened this issue Oct 23, 2017 · 0 comments
Open

Anatomical processing planning #152

mwaskom opened this issue Oct 23, 2017 · 0 comments

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@mwaskom
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mwaskom commented Oct 23, 2017

We're going to need to add wholly-new anatomical pre- and post-processing. This will include:

  • T1w/T2w registration, averaging, and bias-field removal. This work is mostly done here: https://github.com/mwaskom/prisma_preproc/blob/master/prisma_anat.py
  • Executing recon-all, with expert arguments for hires data, perhaps with the HCP approach to pial surface estimation
  • Relevant post-recon-all processing, including making a less-inflated surface for visualization and a graymid surface for voxel<->vertex mapping
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