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Unexpected character during data import #1924

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DennisJakob opened this issue Jun 20, 2024 · 1 comment
Open

Unexpected character during data import #1924

DennisJakob opened this issue Jun 20, 2024 · 1 comment

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@DennisJakob
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Basic information

I am running MZmine 4.1.0 on a Windows computer.

What happened

I am trying to import SQ data from a Waters SQD2 acquired with Empower 3.
The FullMS channel was exported in .cdf format and converted to Waters RAW with Dbridge (by Waters).
The RAW data were converted with MSConvert GUI and can be viewed via MSview successfully.

When importing the data to MZmine 4 I get the attached error message.
mzmine_error.txt
I also attach the raw and converted files.
TEST4661.zip

I hope you can help with this issue.
Best Dennis.

@SteffenHeu
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Hi Dennis,

that sounds like there are quite some conversion steps that could be the source of the error. Can you use this tool to convert? https://mzmine.github.io/mzmine_documentation/data_conversion.html#waters

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