HiCDOCDataSetFromTabular

[gk1610]

Hi
Everytime I try to read .tsv file with 2 conditions using HiCDOCDataSetFromTabular function, I get the following error. Could you please post your example.tsv file? I can then try your example file with HiCDOCDataSetFromTabular

First few lines of temp.tsv file
chromosome position 1 position 2 1.R1 2.R1
22 100000 100000 0 0
22 100000 200000 0 0
22 100000 200000 0 0
22 100000 300000 0 0

hic.experiment <- HiCDOCDataSetFromTabular('/temp.tsv')
Parsing '/temp.tsv'.
Error in rbind(assay, as.matrix(rep(0, nb * ncol(assay)), ncol = ncol(assay), :
number of columns of matrices must match (see arg 2)

[emaigne]

Hi,
Sorry for the delay.
Your structure seems fine but is it tab separated ? If it is a space separator I guess the columns names are mixing things up (position 1).
Here is an example of tsv file. example.zip