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The annotation number does not match your pretrained model #26

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zhongguojie1998 opened this issue Jun 16, 2022 · 3 comments
Closed

The annotation number does not match your pretrained model #26

zhongguojie1998 opened this issue Jun 16, 2022 · 3 comments

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@zhongguojie1998
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Hi Protein_bert team,

Thanks for providing such useful model. I found one weird thing about your pretrained model, after I created the uniref90 database and merged with GO database through the pipeline you provided, I got 9211 annotation records. This is different from your number in the manuscript, 8943. Would you mind taking a look into this?

@nadavbra
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@zhongguojie1998 I think it makes sense. UniProt and GO constantly update their databases, so it makes sense that more annotations will be added over time.

@davoudisaeedeh
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@nadavbra Which release date of uniref90 did you use for pertaining?

@nadavbra
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nadavbra commented Aug 7, 2022

@dsaeedeh Please see my response to your other issue.

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