tools.yaml.lock

install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: dwt_var_perfeature
  owner: devteam
  revisions:
  - cb1c59d69557
  tool_panel_section_label: Statistics
- name: suite_qiime
  owner: iuc
  revisions:
  - c5d785da19a7
  - b2e54849fd5c
  tool_panel_section_label: Qiime
- name: suite_mothur
  owner: iuc
  revisions:
  - 50f1227b870c
  - 768c2e48b706
  tool_panel_section_label: Mothur
- name: bedtools
  owner: iuc
  revisions:
  - b8348686a0b9
  tool_panel_section_label: Operate on Genomic Intervals
- name: mlocarna
  owner: rnateam
  revisions:
  - 59055c49a112
  tool_panel_section_label: RNA Analysis
- name: rcas
  owner: rnateam
  revisions:
  - aa9579837a2e
  tool_panel_section_label: RNA Analysis
- name: paralyzer
  owner: rnateam
  revisions:
  - 4dbe81be8b81
  tool_panel_section_label: RNA Analysis
- name: ebi_search_rest_results
  owner: iuc
  revisions:
  - 42d5e40fcd0b
  - b6029f2c71cb
  tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
  owner: iuc
  revisions:
  - e2e9fae080ad
  - a1ef6c88ee37
  tool_panel_section_label: Get Data
- name: transformation
  owner: ethevenot
  revisions:
  - d9e05021553c
  tool_panel_section_label: Statistics
- name: anova
  owner: lecorguille
  revisions:
  - bcd05315efc5
  tool_panel_section_label: Statistics
- name: heatmap
  owner: ethevenot
  revisions:
  - db1d80e89156
  tool_panel_section_label: Statistics
- name: univariate
  owner: ethevenot
  revisions:
  - 140290de7986
  tool_panel_section_label: Statistics
- name: multivariate
  owner: ethevenot
  revisions:
  - e91de3b04320
  tool_panel_section_label: Statistics
- name: biosigner
  owner: ethevenot
  revisions:
  - b2414be87d4b
  tool_panel_section_label: Statistics
- name: probmetab
  owner: mmonsoor
  revisions:
  - 52b222a626b0
  tool_panel_section_label: Annotation
- name: lcmsmatching
  owner: prog
  revisions:
  - fb9c0409d85c
  tool_panel_section_label: Annotation
- name: add_input_name_as_column
  owner: mvdbeek
  revisions:
  - b31219f26a8f
  tool_panel_section_label: Text Manipulation
- name: taxonomy_krona_chart
  owner: crs4
  revisions:
  - 020b3087d0b7
  tool_panel_section_label: NCBI Blast
- name: text_processing
  owner: bgruening
  revisions:
  - 20344ce0c811
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: uniprotxml_downloader
  owner: galaxyp
  revisions:
  - e1abc9a35c64
  tool_panel_section_label: Get Data
- name: sra_tools
  owner: iuc
  revisions:
  - 26b7446bb17e
  - b723c120161a
  tool_panel_section_label: Get Data
- name: ega_download_streamer
  owner: yhoogstrate
  revisions:
  - 3e2cccf08053
  tool_panel_section_label: Get Data
- name: dorina
  owner: rnateam
  revisions:
  - 6986169fa312
  tool_panel_section_label: Get Data
- name: dbbuilder
  owner: galaxyp
  revisions:
  - a85fbebe8b2f
  tool_panel_section_label: Get Data
- name: unipept
  owner: galaxyp
  revisions:
  - 34758ab8aaa4
  tool_panel_section_label: Get Data
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 6b865dde1baa
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
  - 745871c0b055
  tool_panel_section_label: Text Manipulation
- name: split_file_on_column
  owner: bgruening
  revisions:
  - 90b52d8d6f2c
  tool_panel_section_label: Text Manipulation
- name: merge_cols
  owner: devteam
  revisions:
  - f2aac0c5c60d
  tool_panel_section_label: Text Manipulation
- name: text_processing
  owner: bgruening
  revisions:
  - 20344ce0c811
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
  - bc9c66c1e9c9
  tool_panel_section_label: Text Manipulation
- name: regex_replace
  owner: kellrott
  revisions:
  - 9a77d5fca67c
  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
  - 82fa5062d611
  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
  - 0926c81f382c
  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
  - 8ddabc73af92
  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
  - 8307665c4b6c
  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
  - ffbd1de29c28
  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
  - 765ceb06c3e2
  tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
  owner: devteam
  revisions:
  - 4cd116158aef
  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
  - e0a23ab32d7f
  tool_panel_section_label: Operate on Genomic Intervals
- name: subtract
  owner: devteam
  revisions:
  - 7a2a604ae9c8
  tool_panel_section_label: Join, Subtract and Group
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
  owner: devteam
  revisions:
  - 960d5d114184
  tool_panel_section_label: Text Manipulation
- name: sed_wrapper
  owner: bjoern-gruening
  revisions:
  - 12ac67b5c81d
  tool_panel_section_label: Text Manipulation
- name: unique
  owner: bgruening
  revisions:
  - 7ce75adb93be
  tool_panel_section_label: Text Manipulation
- name: dna_filtering
  owner: devteam
  revisions:
  - 549d2cb4c6f2
  tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
  owner: bgruening
  revisions:
  - f18f67056946
  tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
  owner: peterjc
  revisions:
  - fb1313d79396
  tool_panel_section_label: Filter and Sort
- name: find_in_reference
  owner: jjohnson
  revisions:
  - c4fd2ea4f988
  tool_panel_section_label: Filter and Sort
- name: sample_seqs
  owner: peterjc
  revisions:
  - 02c13ef1a669
  tool_panel_section_label: NCBI Blast
- name: collection_column_join
  owner: iuc
  revisions:
  - dfde09461b1e
  - 9c8536c7ed42
  tool_panel_section_label: Join, Subtract and Group
- name: suite_datamash
  owner: iuc
  revisions:
  - fbe724ced39e
  tool_panel_section_label: Join, Subtract and Group
- name: subtract
  owner: devteam
  revisions:
  - 7a2a604ae9c8
  tool_panel_section_label: Join, Subtract and Group
- name: bam_to_scidx
  owner: iuc
  revisions:
  - b737f6d83f48
  - 11fc60f0e942
  tool_panel_section_label: Convert Formats
- name: map_peptides_to_bed
  owner: galaxyp
  revisions:
  - 78b8213e122d
  tool_panel_section_label: Convert Formats
- name: idconvert
  owner: galaxyp
  revisions:
  - 9e6e840d6b52
  tool_panel_section_label: Convert Formats
- name: msconvert_nix
  owner: galaxyp
  revisions:
  - c9b96a178758
  tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
  owner: iuc
  revisions:
  - 541f300f322d
  - 08b6255afde7
  tool_panel_section_label: Convert Formats
- name: uniprot_rest_interface
  owner: bgruening
  revisions:
  - 48522382b6a4
  tool_panel_section_label: Convert Formats
- name: bigwig_to_bedgraph
  owner: bgruening
  revisions:
  - 3799012ce2ff
  tool_panel_section_label: Convert Formats
- name: gffread
  owner: devteam
  revisions:
  - 0232f19d300f
  tool_panel_section_label: Convert Formats
- name: msconvert
  owner: galaxyp
  revisions:
  - dd4ba10d0c45
  tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
  owner: devteam
  revisions:
  - 0b4e36026794
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_to_tabular
  owner: devteam
  revisions:
  - 7e801ab2b70e
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastqtofasta
  owner: devteam
  revisions:
  - 723b5b38d88a
  tool_panel_section_label: Quality Control
- name: fastq_to_fasta
  owner: devteam
  revisions:
  - 186b8d913e6c
  tool_panel_section_label: Quality Control
- name: length_and_gc_content
  owner: iuc
  revisions:
  - 2ca1baabdae0
  tool_panel_section_label: Extract Features
- name: extract_genomic_dna
  owner: iuc
  revisions:
  - c8467246b57e
  - 8dd8e89c0603
  tool_panel_section_label: Other Tools
- name: concat
  owner: devteam
  revisions:
  - d491589307e7
  tool_panel_section_label: Operate on Genomic Intervals
- name: complement
  owner: devteam
  revisions:
  - e0a23ab32d7f
  tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
  owner: devteam
  revisions:
  - 765ceb06c3e2
  tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
  owner: devteam
  revisions:
  - 3b33da018e74
  tool_panel_section_label: Operate on Genomic Intervals
- name: numeric_clustering
  owner: bgruening
  revisions:
  - a3fd214e7555
  tool_panel_section_label: Statistics
- name: t_test_two_samples
  owner: devteam
  revisions:
  - c2ffc9885b5a
  tool_panel_section_label: Statistics
- name: seq_composition
  owner: peterjc
  revisions:
  - c0eb0e5792f3
  tool_panel_section_label: Statistics
- name: plot_from_lda
  owner: devteam
  revisions:
  - 08affc5d2aef
  tool_panel_section_label: Statistics
- name: mine
  owner: devteam
  revisions:
  - 5e2c89443c44
  tool_panel_section_label: Statistics
- name: lda_analysis
  owner: devteam
  revisions:
  - f0b6217f4a0c
  tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
  owner: devteam
  revisions:
  - 04cdbd00dcec
  tool_panel_section_label: Statistics
- name: count_gff_features
  owner: devteam
  revisions:
  - fabda887a71f
  tool_panel_section_label: Statistics
- name: correlation
  owner: devteam
  revisions:
  - 24e01abf9e34
  tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
  owner: iuc
  revisions:
  - 0fba45ac3987
  - 980917b09eb8
  tool_panel_section_label: Graph/Display Data
- name: jbrowse
  owner: iuc
  revisions:
  - 69c5e9c0add0
  - 2c9e5136b416
  tool_panel_section_label: Graph/Display Data
- name: venn_list
  owner: peterjc
  revisions:
  - 20d347feb882
  tool_panel_section_label: Graph/Display Data
- name: mummer
  owner: peterjc
  revisions:
  - d9f3d4779507
  tool_panel_section_label: Graph/Display Data
- name: karyotype_plot
  owner: guru-ananda
  revisions:
  - d810aa84ee6a
  tool_panel_section_label: Graph/Display Data
- name: covenntree
  owner: steffen
  revisions:
  - 6ef7b64baed3
  tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
  owner: devteam
  revisions:
  - 760f588e8a26
  tool_panel_section_label: Graph/Display Data
- name: scatterplot
  owner: devteam
  revisions:
  - efda9a4a50e7
  tool_panel_section_label: Graph/Display Data
- name: histogram
  owner: devteam
  revisions:
  - cdb9e89e2970
  tool_panel_section_label: Graph/Display Data
- name: gmaj
  owner: devteam
  revisions:
  - 2cd5ee197ec7
  tool_panel_section_label: Graph/Display Data
- name: xy_plot
  owner: devteam
  revisions:
  - 319fa5a9fc1b
  tool_panel_section_label: Graph/Display Data
- name: featurecounter
  owner: devteam
  revisions:
  - ac6218e2b686
  tool_panel_section_label: Regional Variation
- name: indels_3way
  owner: devteam
  revisions:
  - 5ad24b81dd10
  tool_panel_section_label: Regional Variation
- name: draw_stacked_barplots
  owner: devteam
  revisions:
  - e997b710e38a
  tool_panel_section_label: Regional Variation
- name: delete_overlapping_indels
  owner: devteam
  revisions:
  - f16000dc644b
  tool_panel_section_label: Regional Variation
- name: compute_motifs_frequency
  owner: devteam
  revisions:
  - 1f8ee7f9701b
  tool_panel_section_label: Regional Variation
- name: compute_motif_frequencies_for_all_motifs
  owner: devteam
  revisions:
  - 5319efa51514
  tool_panel_section_label: Regional Variation
- name: categorize_elements_satisfying_criteria
  owner: devteam
  revisions:
  - 586c1f0e1515
  tool_panel_section_label: Regional Variation
- name: best_regression_subsets
  owner: devteam
  revisions:
  - 4f33ec73e445
  tool_panel_section_label: Statistics
- name: principal_component_analysis
  owner: devteam
  revisions:
  - f568051cdf2e
  tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
  owner: devteam
  revisions:
  - 3d58aa83e4a3
  tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
  owner: devteam
  revisions:
  - 5ce5a2adb875
  tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
  owner: devteam
  revisions:
  - 9bc0c48a027f
  tool_panel_section_label: Statistics
- name: mutate_snp_codon
  owner: devteam
  revisions:
  - 8f0af7251167
  tool_panel_section_label: Evolution
- name: meme_meme
  owner: iuc
  revisions:
  - e8b209806a20
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  tool_panel_section_label: Motif Tools
- name: meme_fimo
  owner: iuc
  revisions:
  - 40b8472e91ca
  - fd522a964017
  tool_panel_section_label: Motif Tools
- name: weblogo3
  owner: devteam
  revisions:
  - c1a9e644d580
  tool_panel_section_label: Motif Tools
- name: muscle
  owner: crs4
  revisions:
  - 533b3b2a1e66
  tool_panel_section_label: Multiple Alignments
- name: mafft
  owner: rnateam
  revisions:
  - d71e007323d4
  tool_panel_section_label: Multiple Alignments
- name: hammock
  owner: hammock
  revisions:
  - 4db310b7e37c
  tool_panel_section_label: Annotation
- name: compalignp
  owner: rnateam
  revisions:
  - 7e55ac3bd458
  tool_panel_section_label: Multiple Alignments
- name: mafft
  owner: rnateam
  revisions:
  - d71e007323d4
  tool_panel_section_label: Multiple Alignments
- name: cdhit
  owner: jjohnson
  revisions:
  - 28b7a43907f0
  tool_panel_section_label: Multiple Alignments
- name: clustalw
  owner: devteam
  revisions:
  - d6694932c5e0
  tool_panel_section_label: Multiple Alignments
- name: vegan_diversity
  owner: iuc
  revisions:
  - db56c8e79b1e
  - c58e19ff504a
  tool_panel_section_label: Metagenomic analyses
- name: vegan_fisher_alpha
  owner: iuc
  revisions:
  - d6b92ca3a9a1
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  tool_panel_section_label: Metagenomic analyses
- name: vegan_rarefaction
  owner: iuc
  revisions:
  - dd2705a31239
  - 3d1d965b6423
  tool_panel_section_label: Metagenomic analyses
- name: vsearch
  owner: iuc
  revisions:
  - 576963db5f1b
  - fae6527990af
  tool_panel_section_label: Metagenomic analyses
- name: khmer_filter_abundance
  owner: iuc
  revisions:
  - a4970dfc331c
  tool_panel_section_label: Metagenomic analyses
- name: khmer_filter_below_abundance_cutoff
  owner: iuc
  revisions:
  - d9cc87dfec6e
  tool_panel_section_label: Metagenomic analyses
- name: khmer_extract_partitions
  owner: iuc
  revisions:
  - 7d8138b4a593
  tool_panel_section_label: Metagenomic analyses
- name: khmer_abundance_distribution
  owner: iuc
  revisions:
  - a02efb62565b
  tool_panel_section_label: Metagenomic analyses
- name: khmer_count_median
  owner: iuc
  revisions:
  - 5efc5f21d0c1
  tool_panel_section_label: Metagenomic analyses
- name: khmer_partition
  owner: iuc
  revisions:
  - c393687bd857
  tool_panel_section_label: Metagenomic analyses
- name: khmer_normalize_by_median
  owner: iuc
  revisions:
  - f0290a079720
  tool_panel_section_label: Metagenomic analyses
- name: khmer_abundance_distribution_single
  owner: iuc
  revisions:
  - 792d520ba676
  tool_panel_section_label: Metagenomic analyses
- name: t2t_report
  owner: devteam
  revisions:
  - 592acb9505fc
  tool_panel_section_label: Metagenomic analyses
- name: t2ps
  owner: devteam
  revisions:
  - 4d9910e996f7
  tool_panel_section_label: Metagenomic analyses
- name: poisson2test
  owner: devteam
  revisions:
  - 5ff18ec88181
  tool_panel_section_label: Metagenomic analyses
- name: lca_wrapper
  owner: devteam
  revisions:
  - 33e8ed5a4601
  tool_panel_section_label: Metagenomic analyses
- name: gi2taxonomy
  owner: devteam
  revisions:
  - 7b1b03c4465d
  tool_panel_section_label: Metagenomic analyses
- name: find_diag_hits
  owner: devteam
  revisions:
  - acf51ff24c7d
  tool_panel_section_label: Metagenomic analyses
- name: fasta_merge_files_and_filter_unique_sequences
  owner: galaxyp
  revisions:
  - 9ad0d336e5ed
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: lighter
  owner: bgruening
  revisions:
  - 89b453176d05
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: sickle
  owner: iuc
  revisions:
  - 3905ccd5c631
  - edaa8572219d
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastq_paired_end_interlacer
  owner: devteam
  revisions:
  - ec6ddf449651
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastq_paired_end_joiner
  owner: devteam
  revisions:
  - 6a7f5da7c76d
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_compute_length
  owner: devteam
  revisions:
  - de2db1bdfbf8
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastq_join
  owner: lparsons
  revisions:
  - 8ec3dfde378b
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: splitfasta
  owner: rnateam
  revisions:
  - ae4d5733272f
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: je_clip
  owner: gbcs-embl-heidelberg
  revisions:
  - 8b4ccdf5f7dd
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: je_demultiplex
  owner: gbcs-embl-heidelberg
  revisions:
  - 6da7b7886cbf
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: je_demultiplex_illu
  owner: gbcs-embl-heidelberg
  revisions:
  - 69c77f9fc064
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: je_markdupes
  owner: gbcs-embl-heidelberg
  revisions:
  - 384b972e43bc
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: align_back_trans
  owner: peterjc
  revisions:
  - 9fbf29a8c12b
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: seq_filter_by_mapping
  owner: peterjc
  revisions:
  - 8ff0ac66f1a3
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: pear
  owner: iuc
  revisions:
  - 240f611a46f3
  - 581e52f03c5d
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastx_artifacts_filter
  owner: devteam
  revisions:
  - 09070cacefd8
  tool_panel_section_label: Quality Control
- name: fastx_barcode_splitter
  owner: devteam
  revisions:
  - 8abdedf55101
  tool_panel_section_label: Quality Control
- name: fastx_clipper
  owner: devteam
  revisions:
  - bdf1ce174e39
  tool_panel_section_label: Quality Control
- name: fastx_nucleotides_distribution
  owner: devteam
  revisions:
  - 63d6e2daad48
  tool_panel_section_label: Quality Control
- name: fasta_filter_by_length
  owner: devteam
  revisions:
  - c8cd0a03db49
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_concatenate_by_species
  owner: devteam
  revisions:
  - 717aee069681
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastx_collapser
  owner: devteam
  revisions:
  - 421f0af4ee95
  tool_panel_section_label: Quality Control
- name: fasta_nucleotide_changer
  owner: devteam
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