Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

No annotation for the options #53

Open
MiltonKoB opened this issue Sep 19, 2018 · 0 comments
Open

No annotation for the options #53

MiltonKoB opened this issue Sep 19, 2018 · 0 comments

Comments

@MiltonKoB
Copy link

MiltonKoB commented Sep 19, 2018

I was able to find the following explanation for the options but what is -g? I didn't see this from --help. Thanks.

se : use single end mode
-f this is the input fastq file
-t sanger : the quality encoding
-o the output file
-q 30 : the quality value to use. Bases below this will be trimmed, using a sliding window
-l 15 : the minimum length allowed after trimming. Here we remove reads with less than 15bp

Update - I think it means to gzip the file.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant