You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I was able to find the following explanation for the options but what is -g? I didn't see this from --help. Thanks.
se : use single end mode
-f this is the input fastq file
-t sanger : the quality encoding
-o the output file
-q 30 : the quality value to use. Bases below this will be trimmed, using a sliding window
-l 15 : the minimum length allowed after trimming. Here we remove reads with less than 15bp
Update - I think it means to gzip the file.
The text was updated successfully, but these errors were encountered:
I was able to find the following explanation for the options but what is -g? I didn't see this from --help. Thanks.
se : use single end mode
-f this is the input fastq file
-t sanger : the quality encoding
-o the output file
-q 30 : the quality value to use. Bases below this will be trimmed, using a sliding window
-l 15 : the minimum length allowed after trimming. Here we remove reads with less than 15bp
Update - I think it means to gzip the file.
The text was updated successfully, but these errors were encountered: