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slso-base.json
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slso-base.json
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{
"graphs" : [ {
"id" : "http://purl.obolibrary.org/obo/slso/slso-base.json",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/type",
"val" : "http://purl.obolibrary.org/obo/IAO_8000001"
}, {
"pred" : "http://purl.org/dc/terms/description",
"val" : "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data."
}, {
"pred" : "http://purl.org/dc/terms/license",
"val" : "http://creativecommons.org/licenses/by/3.0/"
}, {
"pred" : "http://purl.org/dc/terms/title",
"val" : "Space Life Sciences Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-05-17"
} ],
"version" : "http://purl.obolibrary.org/obo/slso/releases/2024-05-17/slso-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/GENO_0000536",
"lbl" : "has_genotype",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000001",
"lbl" : "operates",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000002",
"lbl" : "operatedBy",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000003",
"lbl" : "managedAt",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000004",
"lbl" : "managed",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000007",
"lbl" : "depicts",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000008",
"lbl" : "depictedIn",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000011",
"lbl" : "fundedBy",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000012",
"lbl" : "funded",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000013",
"lbl" : "implements",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000014",
"lbl" : "implementedBy",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000015",
"lbl" : "owned by",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "owned by"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000016",
"lbl" : "owns",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "owns"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000017",
"lbl" : "investigates",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000018",
"lbl" : "investigatedBy",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000019",
"lbl" : "scientific results",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A type of document, physical or digital, comprised of data and/or analytical assessment related to a scientific protocol."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Scientific documents can be referenced or included in publicationDocuments."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000020",
"lbl" : "experiment document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Any document (electronic or written record) that is about an experiment process (limited to the conduct of the experiment)"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "0"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000021",
"lbl" : "space life sciences dataset",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A data product that is an aggregate of data items of the same type that have something in common. Averages and distributions can be determined for data sets."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000022",
"lbl" : "experiment",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A coordinated set of actions and observations designed to generate data, with the ultimate goal of discovery or hypothesis testing."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000023",
"lbl" : "hardware document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A document that is about an item of hardware. For LSDA, hardware documents include hardware design, manufacturing, and operations documents"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000024",
"lbl" : "investigator (human)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An individual who conducts scientific research. The investigator collects and analyses data and study documents, and provides reports in compliance with applicable requirements"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000025",
"lbl" : "project document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A document that is about a project. For LSDA, project documents include project operations, schedules, and other related documents."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000026",
"lbl" : "nasa center",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A federally funded facility where NASA activities are undertaken. "
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This would include JPL and other federally funded Centers. Is that in line with NGLSDA usage?"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000027",
"lbl" : "program",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Semantic Type: Conceptual Entity NCIt Definition: A broad framework of goals to be achieved. Semantic Type: Organization: NCIt Definition: The principal administrative organization responsible for the research conducted."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000028",
"lbl" : "LSDA document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "NCIt Definition: A physical object, or electronic counterpart, that is characterized by containing writing which is meant to be human-readable."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : " \"By this definition no binary files are documents (we assume they become dataset files in NGLSDA)\""
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000029",
"lbl" : "image (LSDA)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A document that is an affine projection to a two dimensional surface, of EM spectrum radiation or measurements of some quality of an entity or entities repeated at regular intervals across a spatial range (where the measurements are represented as color and luminosity on the projected surface.)"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Modified from IAO image definition and its stated relationship to the concept of document. Another source that was used to develop this definition is http://vocab.getty.edu/page/aat/300264387 which defines image as (quoting) Depictions and representations on a surface in two dimensions or low relief, or digital, whether the optical counterpart exists in reality or only in imagination. For example, the term may refer to a depiction as distinguished from its support, as when referring to a drawing as distinct from the paper upon which it is drawn."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000030",
"lbl" : "payload",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "The International Standard Payload Rack (ISPR) is a steel framework container that is designed and been adopted by the International Space Station (ISS) program to support efficient integration and interchangeability of space payload hardware, such as machines and experiment"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000031",
"lbl" : "personnel",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Persons employed in any field."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000032",
"lbl" : "spacecraft",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Devices, manned and unmanned, which are designed to be placed into an orbit about the Earth or into a trajectory to another celestial body."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000033",
"lbl" : "biospecimen",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Note that any whole entity cannot be a biospecimen"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000034",
"lbl" : "subject",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An entity of interest, either biological or otherwise. EXAMPLE(S): A human being who might be of interest because they are on a study, a sheep who might have experienced an adverse event, or a pacemaker that failed. An entity, either biologic or otherwise, of interest in an investigation. [Definition Source: NCI]"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000035",
"lbl" : "dataset file",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A set of related data (either written or electronic) and is a part of a dataset"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000036",
"lbl" : "component",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An item of hardware that is a part of another item of hardware."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000037",
"lbl" : "hardware",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A physical, manufactured or otherwise processed object that is used in a scientific investigation or clinical activity."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000038",
"lbl" : "research mission",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Coordinated tasks and operations undertaken to meet a set of specific scientific or technical objectives, within clearly delineated time and location constraints."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000039",
"lbl" : "publication document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "NCIt Definition: A printed or electronic work offered for distribution. MSH Definition: Copies of a work or document distributed to the public by sale, rental, lease, or lending. (From ALA Glossary of Library and Information Science, 1983, p181) CSP Definition: copy or copies of a document offered for distribution; includes the preparation of the documented material."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000040",
"lbl" : "technical paper",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate a particular subject, art, craft, technique, applied science and/or industrial service."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000043",
"lbl" : "scientific name",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "The name applied to a plant, animal, or other organism, according to the Codes of Nomenclature, consisting of a Genus and species."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000044",
"lbl" : "photo gallery",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "TBD"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Currently not in NGLSDA. (Dan to review with John)"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000046",
"lbl" : "newsletter document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "NCIt Definition: A regularly issued printed or electronic report describing a main topic of interest to its subscribers."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000047",
"lbl" : "institution",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "NCIt Definition: An established society, corporation, foundation or other organization founded and united for a specific purpose, e.g. for health-related research; also used to refer to a building or buildings occupied or used by such organization. CDISC Definition: An established society, corporation, foundation or other organization founded and united for a specific purpose, e.g. for health-related research; also used to refer to a building or buildings occupied or used by such organization. MGED Definition: A contacts affiliation, e.g. university, research institute or business."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000048",
"lbl" : "mission document",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A document that is about a mission. For LSDA, mission documents include mission personnel, operations, schedules, and other related documents."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000049",
"lbl" : "principal investigator (human)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A person responsible for the overall conduct of a study"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000050",
"lbl" : "age (at launch/start)",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "How long something or someone has existed; measured at launch/start"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0000053",
"lbl" : "research area",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "Indicates the scientific area addressed by the study. This clas is maintained by NASA Life Sciences Data Archive."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001049",
"lbl" : "dataset catalog id",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : " This alphanumeric string is generated at data acquisition, and is used to uniquely identify the dataset."
},
"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Dataset Catalog"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "dataset_catalog"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001050",
"lbl" : "subject id",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "ALSDA subject ID: Unique numeric identifier of a group to which the subject belongs. Examples of subject groups (Flight/Ground Control/Basal) "
},
"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "From Subject Number"
}, {
"pred" : "http://purl.obolibrary.org/obo/SLSO_0020001",
"val" : "ALSDA Subject ID"
}, {
"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "subject_id"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001051",
"lbl" : "bio ID",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "The UID assigned by NBISC and used in the Ames Life Science Data Archive"
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"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Bio ID"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020001",
"val" : "ALSDA Biospecimen ID"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "bio_id"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001054",
"lbl" : "document number",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Original document number assigned by the JSC or ARC project, mission level offices, or headquarters level offices. For publication citations only, this is a number generated by the SQL database."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
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"val" : "Document Number"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "document_number"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001055",
"lbl" : "biospecimen category",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function."
},
"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Biospecimen Category"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020001",
"val" : "Biospecimen Category"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "category"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001056",
"lbl" : "release date",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Date when data are released (usually by the PI) to the archive, or released to go on the public Website."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Release Date"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "release_date"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001058",
"lbl" : "duration",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Magnitude of the temporal extent between the start of mission operations and the end of mission operations"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
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"val" : "Duration"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001059",
"lbl" : "alternate experiment name",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A short title assigned to the study"
},
"basicPropertyValues" : [ {
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"val" : "NASA Life Sciences Portal"
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"val" : "Alternate Experiment Name(s)"
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"val" : "experiment_alias"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001060",
"lbl" : "keyword",
"type" : "PROPERTY",
"meta" : {
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001061",
"lbl" : "dataset availability",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "This value denotes whether a dataset is available for download on the public site. Datasets are either available for download on-line, or available off-line in hardcopy form."
},
"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Dataset Availability"
}, {
"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "dataset availability"
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"pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym",
"val" : " Available; Availability"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001062",
"lbl" : "last name",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "The family name associated with the object"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "NASA Life Sciences Portal"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Last Name"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "lname"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001063",
"lbl" : "Taxon",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Phylogenetic classification of the subject or biospecimen host. Examples include: Homo sapiens, Mus musculus"
},
"basicPropertyValues" : [ {
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"val" : "Subject Science Name"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020001",
"val" : "Type"
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"val" : "subject_sci_name"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001065",
"lbl" : "Common name",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A textual entity refers to a taxon or organism that is based on the normal language of everyday life; this kind of name is often contrasted with the scientific name for the same organism, which is Latinized."
},
"basicPropertyValues" : [ {
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020000",
"val" : "Subject Species"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020001",
"val" : "Common name"
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"pred" : "http://purl.obolibrary.org/obo/SLSO_0020002",
"val" : "subject_species"
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001067",
"lbl" : "document title",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Typically, a Title will be a name by which the resource is formally known. cf IAO:0000305 document title as a class"
},
"basicPropertyValues" : [ {
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001068",
"lbl" : "session type",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Experimental group that a subject belongs to (fixed choice: F, B, GC, V, etc.)"
},
"basicPropertyValues" : [ {
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001069",
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"id" : "http://purl.obolibrary.org/obo/SLSO_0001071",
"lbl" : "proposal source",
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"meta" : {
"definition" : {
"val" : "Identifier for NASA's research announcements or other \"calls for proposals\" (i.e. AO, NRA, etc.) soliciting the experiment"
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}, {
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"val" : "mission_id"
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}
}, {
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"definition" : {
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"definition" : {
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},
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}
}, {
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"meta" : {
"definition" : {
"val" : "A textual entity that specifies characteristics of some entity. cf. apollosv:00000476"
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}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001081",
"lbl" : "image id",
"type" : "PROPERTY",
"meta" : {
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}, {
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"definition" : {
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}
}, {
"id" : "http://purl.obolibrary.org/obo/SLSO_0001085",
"lbl" : "institution name",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A human-readable version of this object"
},
"basicPropertyValues" : [ {
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"val" : "synonymous with rdfs:label as applied to institution"
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}
}, {
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"type" : "PROPERTY",
"meta" : {
"definition" : {
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"lbl" : "launch date",
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}, {
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}, {
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"type" : "PROPERTY",
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"definition" : {
"val" : "The official name given to a study - usually the same name used when responding to a solicitation"
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"meta" : {
"definition" : {
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"basicPropertyValues" : [ {
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