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ImproveNLS.bib
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% Encoding: UTF-8
%% Jones -- Spiral is duplicated
@TechReport{Torvisco2018,
title = {A New Algorithm to Fit Exponential Decays without Initial Guess},
author = {Juan Antonio Fernandez Torvisco and Mariano Rodrıguez-Arias Fernandez and Javier Cabello Sanchez},
institution = {{Faculty of Sciences and Mathematics, University of Niˇs, Serbia}},
doi = {doi.org/10.2298/FIL1812233T},
year = 2018
}
@Article{p-lme4,
title = {Fitting Linear Mixed-Effects Models Using {lme4}},
author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
journal = {Journal of Statistical Software},
year = {2015},
volume = {67},
number = {1},
pages = {1--48},
doi = {10.18637/jss.v067.i01}
}
@article{tvrdik2007,
title = {Adaptive population-based search: Application to estimation of nonlinear regression parameters},
author = {{Josef Tvrdík and Ivan Křivý and Ladislav Mišík}},
journal = {{Computational Statistics & Data Analysis}},
volume = 52,
number = 2,
month = oct,
year = 2007,
pages = {713--724},
url = {https://doi.org/10.1016/j.csda.2006.10.014}
}
@Manual{m-easynls,
title = {easynls: Easy Nonlinear Model},
author = {Emmanuel Arnhold},
year = {2017},
note = {R package version 5.0},
url = {https://CRAN.R-project.org/package=easynls}
}
@Manual{m-nlsmsn,
title = {nlsmsn: Fitting Nonlinear Models with Scale Mixture of Skew-Normal
Distributions},
author = {Marcos Prates and Victor Lachos and Aldo Garay},
year = {2021},
note = {R package version 0.0-6},
url = {https://CRAN.R-project.org/package=nlsmsn},
}
@Manual{m-nlstac,
title = {nlstac: An R Package for Fitting Separable Nonlinear Models},
author = {Mariano Rodriguez-Arias and Juan Antonio Fernandez and Javier Cabello and Rafael Benitez},
year = {2020},
note = {R package version 0.1.0},
url = {https://CRAN.R-project.org/package=nlstac},
}
@Manual{nlsmultstart,
title = {nls.multstart: Robust Non-Linear Regression using AIC Scores},
author = {Daniel Padfield and Granville Matheson},
year = {2020},
note = {R package version 1.2.0},
url = {https://CRAN.R-project.org/package=nls.multstart},
}
@Manual{nlsMicrobio-manual,
title = {nlsMicrobio: data sets and nonlinear regression models dedicated to predictive microbiology},
author = {Florent Baty and Marie-Laure Delignette-Muller},
year = {2014},
note = {R package version 0.0-1}
}
@Manual{nlsic-manual,
title = {nlsic: Non Linear Least Squares with Inequality Constraints},
author = {Serguei Sokol},
year = {2022},
note = {R package version 1.0.2},
url = {https://CRAN.R-project.org/package=nlsic}
}
@Manual{nlshelper-manual,
title = {nlshelper: Convenient Functions for Non-Linear Regression},
author = {Remko Duursma},
year = {2017},
note = {R package version 0.2},
url = {https://CRAN.R-project.org/package=nlshelper},
}
@Manual{NISTnls-manual,
title = {NISTnls: Nonlinear least squares examples from NIST},
author = {original from National Institutes for Standards and Technology http://www.itl.nist.gov/div898/strd/nls/nls_main.shtml R port by Douglas Bates},
year = {2012},
note = {R package version 0.9-13},
url = {https://CRAN.R-project.org/package=NISTnls},
}
@Manual{R-crsnls-manual,
title = {crsnls: Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'},
author = {Josef Tvrdík},
year = {2016},
note = {R package version 0.2},
url = {https://CRAN.R-project.org/package=crsnls},
}
@Manual{R-onls-manual,
title = {onls: Orthogonal Nonlinear Least-Squares Regression},
author = {{Andrej-Nikolai Spiess}},
year = {2022},
note = {R package version 0.1-2},
url = {https://CRAN.R-project.org/package=onls},
}
@book{GSL-manual,
author = {Galassi, Mark and Davies, Jim and Theiler, James and Gough, Brian and Jungman, Gerard},
year = {2009},
month = {01},
pages = {},
title = {GNU Scientific Library - Reference Manual, Third Edition, for GSL Version 1.12 (3. ed.).},
isbn = {978-0-9546120-7-8}
}
@article{Bioconductor,
author = {Gentleman, Robert C. and
Carey, Vincent J. and
Bates, Douglas M. and
Bolstad, Ben and
Dettling, Marcel and
Dudoit, Sandrine and
Ellis, Byron and
Gautier, Laurent and
Ge, Yongchao and
Gentry, Jeff and
Hornik, Kurt and
Hothorn, Torsten and
Huber, Wolfgang and
Iacus, Stefano and
Irizarry, Rafael and
Leisch, Friedrich and
Li, Cheng and
Maechler, Martin and
Rossini, Anthony J. and
Sawitzki, Gunther and
Smith, Colin and
Smyth, Gordon and
Tierney, Luke and
Yang, Jean YH and
Zhang, Jianhua},
year = 2004,
title = {Bioconductor: open software development for computational biology and bioinformatics},
journal = {{Genome Biology}},
volume = 5,
number = {R80},
doi = {10.1186/gb-2004-5-10-r80}
}
@Manual{nls2-22,
title = {nls2: Non-Linear Regression with Brute Force},
author = {G. Grothendieck},
year = {2022},
note = {R package version 0.3-3},
url = {https://CRAN.R-project.org/package=nls2},
}
@Manual{gslnls23,
title = {gslnls: GSL Nonlinear Least-Squares Fitting},
author = {Joris Chau},
year = {2023},
note = {R package version 1.1.2},
url = {https://CRAN.R-project.org/package=gslnls},
}
@article{JNABRefactoringNLS22,
title = {{Refactoring the `nls()` function in R}},
author = {John C. Nash and Arkajyoti Bhattacharjee},
year = {2022},
url = {https://github.com/nashjc/RNonlinearLS/blob/main/RefactoringNLS/RefactoringNLS.pdf},
note = {In preparation for publication.}
}
@article{ArchMiguez2013,
author = {Archontoulis, S.V. and Miguez, Fernando},
year = {2013},
month = {01},
pages = {1},
title = {Nonlinear Regression Models and Applications in Agricultural Research},
volume = {105},
journal = {Agronomy Journal},
doi = {10.2134/agronj2012.0506}
}
@Manual{nlsr2019manual,
title = {{nlsr: Functions for Nonlinear Least Squares Solutions}},
author = {{John C Nash} and {Duncan Murdoch}},
month = aug,
year = {2019},
note = {R package version 2019.8.7},
}
@Manual{nlsr2023manual,
title = {{nlsr: Functions for Nonlinear Least Squares Solutions}},
author = {{John C Nash} and {Duncan Murdoch}},
month = aug,
year = {2023},
note = {R package version 2019.8.7},
}
@InBook{SGN83,
pages = {91--100},
title = {{Truncated-Newton Methods for Large-Scale Minimization}},
year = {1983},
author = {Stephen G. Nash},
editor = {H. E. Rauch},
booktitle = {Applications of Nonlinear Programming to Optimization and Control},
}
@Article{vanderLoo21,
author = {MPJ {van der Loo}},
title = {{A method for deriving information from running R code}},
journal = {The R Journal},
year = {2021},
volume = {13},
pages = {42--52},
issn = {2073-4859},
doi = {10.32614/RJ-2021-056},
issue = {1},
}
@Article{HWtestthat11,
author = {Hadley Wickham},
title = {{testthat: Get Started with Testing}},
journal = {The R Journal},
year = {2011},
volume = {3},
pages = {5--10},
url = {https://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf},
}
@Manual{HWdevtools21,
title = {{devtools: Tools to Make Developing R Packages Easier}},
author = {Hadley Wickham and Jim Hester and Winston Chang and Jennifer Bryan},
year = {2021},
note = {R package version 2.4.3},
url = {https://CRAN.R-project.org/package=devtools},
}
@article{Vidoni21,
author = {Melina Vidoni},
title = {{Software Engineering and R Programming: A Call for Research}},
year = {2021},
journal = {{The R Journal}},
doi = {10.32614/RJ-2021-108},
url = {https://doi.org/10.32614/RJ-2021-108},
pages = {6--14},
volume = {13},
number = {2}
}
@Book{Dongarra79,
title = {{LINPACK Users' Guide}},
publisher = {Society for Industrial and Applied Mathematics},
year = {1979},
author = {Dongarra, J. J. and Moler, C. B. and Bunch, J. R. and Stewart, G. W.},
doi = {10.1137/1.9781611971811},
url = {https://epubs.siam.org/doi/abs/10.1137/1.9781611971811},
}
@Article{NashWires22,
author = {Nash, John C.},
title = {{Function minimization and nonlinear least squares in R}},
journal = {WIREs Computational Statistics},
year = {2022},
number = {e1580},
doi = {https://doi.org/10.1002/wics.1580},
keywords = {function minimization, optimization, R},
url = {https://wires.onlinelibrary.wiley.com/doi/abs/10.1002/wics.1580},
}
@Article{PkgFromRbase22,
title = {Making a package from base {R} files},
author = {John C. Nash and Arkajyoti Bhattacharjee},
journal = {R-bloggers},
year = {2022},
month = jan,
day = {19},
url = {https://www.r-bloggers.com/2022/01/making-a-package-from-base-r-files/},
}
@TechReport{RMachID2022,
title = {{RMachID: A Machine Profile Summary}},
author = {John C. Nash and Arkajyoti Bhattacharjee},
url = {https://github.com/nashjc/RNonlinearLS/tree/main/MachineSummary}
}
@Article{maxLik2011,
title = {maxLik: A package for maximum likelihood estimation in {R}},
author = {Arne Henningsen and Ott Toomet},
journal = {Computational Statistics},
year = {2011},
volume = {26},
number = {3},
pages = {443-458},
doi = {10.1007/s00180-010-0217-1},
url = {http://dx.doi.org/10.1007/s00180-010-0217-1},
}
@Manual{nlsic22,
title = {nlsic: Non Linear Least Squares with Inequality Constraints},
author = {Serguei Sokol},
year = {2022},
note = {R package version 1.0.1},
url = {https://CRAN.R-project.org/package=nlsic},
}
@Article{Rocker2017,
title = {{An Introduction to Rocker: Docker Containers for R}},
author = {by Carl Boettiger and Dirk Eddelbuettel},
journal = {R Journal of Statistical Software},
year = {2017},
volume = {9},
number = {2},
url = {https://journal.r-project.org/archive/2017/RJ-2017-065/RJ-2017-065.pdf},
}
@Manual{benchmarkme,
title = {benchmarkme: Crowd Sourced System Benchmarks},
author = {Colin Gillespie},
year = {2022},
note = {R package version 1.0.8},
url = {https://CRAN.R-project.org/package=benchmarkme},
}
@TechReport{Birkisson2013,
title={Automatic linearity detection, Report NA-13-04},
institution={Mathematical Institute, University of Oxford},
year=2013,
url={https://core.ac.uk/download/pdf/9695588.pdf}
}
@article{Zhang2011LinNonlin,
ISSN = {01621459},
URL = {http://www.jstor.org/stable/23427577},
author = {Hao Helen Zhang and Guang Cheng and Yufeng Liu},
journal = {Journal of the American Statistical Association},
number = {495},
pages = {1099--1112},
publisher = {[American Statistical Association, Taylor & Francis, Ltd.]},
title = {Linear or Nonlinear? Automatic Structure Discovery for Partially Linear Models},
volume = {106},
year = {2011}
}
@Manual{MiguezNLRAA2021,
title = {{nlraa: Nonlinear Regression for Agricultural Applications}},
author = {Fernando Miguez},
year = {2021},
note = {R package version 0.89},
url = {https://CRAN.R-project.org/package=nlraa},
}
@Article{BLAS79,
author = {Lawson, C. L. and Hanson, R. J. and Kincaid, D. and Krogh, F. T.},
title = {{Basic Linear Algebra Subprograms for FORTRAN usage}},
journal = {ACM Tran. Math. Softw.},
year = {1979},
volume = {5},
number = {3},
pages = {308--323},
}
@article{DrmacVeselic2008-2,
author = {Drma\v{c}, Zlatko and Veseli\'{c}, Kre\v{s}imir},
title = {New Fast and Accurate Jacobi SVD Algorithm. II},
year = {2008},
issue_date = {November 2007},
publisher = {Society for Industrial and Applied Mathematics},
address = {USA},
volume = {29},
number = {4},
issn = {0895-4798},
url = {https://doi.org/10.1137/05063920X},
doi = {10.1137/05063920X},
journal = {SIAM J. Matrix Anal. Appl.},
month = jan,
pages = {1343–1362},
numpages = {20},
keywords = {singular value decomposition, Jacobi method, eigenvalues}
}
@article{Drmac2017Alg977,
author = {Drma\v{c}, Zlatko},
title = {Algorithm 977: A QR--Preconditioned QR SVD Method for Computing the SVD with High Accuracy},
year = {2017},
issue_date = {July 2017},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
volume = {44},
number = {1},
issn = {0098-3500},
url = {https://doi-org.proxy.bib.uottawa.ca/10.1145/3061709},
doi = {10.1145/3061709},
journal = {ACM Trans. Math. Softw.},
month = jul,
articleno = {11},
numpages = {30},
keywords = {condition number, Accuracy, SVD, pivoting, Jacobi method}
}
@article{Drmac1997ImplementationOJ,
title={Implementation of Jacobi Rotations for Accurate Singular Value Computation in Floating Point Arithmetic},
author={Z. Drmac},
journal={SIAM J. Sci. Comput.},
year={1997},
volume={18},
pages={1200-1222}
}
@Inbook{Drmac2003,
author="Drma{\v{c}}, Zlatko
and Hari, Vjeran
and Slapni{\v{c}}ar, Ivan",
editor="Drma{\v{c}}, Zlatko
and Hari, Vjeran
and Sopta, Luka
and Tutek, Zvonimir
and Veseli{\'{c}}, Kre{\v{s}}imir",
title="Advances in Jacobi Methods",
bookTitle="Applied Mathematics and Scientific Computing",
year="2003",
publisher="Springer US",
address="Boston, MA",
pages="63--90",
isbn="978-1-4757-4532-0",
doi="10.1007/978-1-4757-4532-0_3",
url="https://doi.org/10.1007/978-1-4757-4532-0_3"
}
@ARTICLE{LukPark1989Jacobi,
author={F. T. {Luk} and H. {Park}},
journal={IEEE Transactions on Computers},
title={A proof of convergence for two parallel Jacobi SVD algorithms},
year={1989},
volume={38},
number={6},
pages={806-811}
}
@article{deRijk1989Jacobi,
author = {de Rijk, P. P. M.},
title = {A One-Sided Jacobi Algorithm for Computing the Singular Value Decomposition on a Vector Computer},
journal = {SIAM Journal on Scientific and Statistical Computing},
volume = {10},
number = {2},
pages = {359-371},
year = {1989}
}
@InBook{GolubReinschSVD1971,
pages = {134--151},
title = {{Singular Value Decomposition and Least Squares Solutions}},
publisher = {Springer Berlin Heidelberg},
year = {1971},
author = {Golub, G. H. and Reinsch, C.},
editor = {Bauer, F. L.},
address = {Berlin, Heidelberg},
isbn = {978-3-662-39778-7},
booktitle = {Linear Algebra},
doi = {10.1007/978-3-662-39778-7_10},
url = {https://doi.org/10.1007/978-3-662-39778-7_10},
}
@article{Bindel2002Givens,
author = {D. Bindel and J. Demmel and W. Kahan and O. Marques},
title = {On computing Givens rotations reliably and efficiently},
journal = {{ACM Transactions on Mathematical Software}},
volume = {28},
number = {2},
month = {june},
pages = {206--238},
year = {2002}
}
@article{Smith91afortran,
author = {David M. Smith},
title = {A FORTRAN package for floating-point multiple-precision arithmetic},
journal = {ACM transactions on mathematical software},
year = {1991},
volume = {17},
pages = {273--283}
}
@article{Jones70Spiral,
author = {Jones, A.},
title = "{Spiral—A new algorithm for non-linear parameter estimation using least squares}",
journal = {The Computer Journal},
volume = {13},
number = {3},
pages = {301-308},
year = {1970},
month = {01}
}
@article{Karpinski85,
author = {Karpinski, Richard},
title = {Paranoia: A floating-point benchmark,},
year = {1985},
journal = {Byte Magazine},
month = feb,
volume = {10},
number ={2},
pages = {223-235}
}
@Article{Cody1988Alg665,
author = "W. J. Cody",
title = "Algorithm 665. {MACHAR}: {A} Subroutine to Dynamically
Determine Machine Parameters",
journal = "ACM Transactions on Mathematical Software",
volume = "14",
number = "4",
pages = "303--311",
month = dec,
year = "1988"
}
@article{HoerlKennard70,
author = {Hoerl, A.E. and Kennard, R.W.},
year = {1970},
title = {Ridge Regression: Biased Estimation for Nonorthogonal Problems},
journal = {Technometrics},
volume = {12},
pages = {55--67}
}
@miscel{BauerReinsch71,
author = {Bauer, F. L. and Reinsch, C.},
title = {Inversion of positive definite matrices by the
{Gauss-Jordan} method},
publisher = {in Wilkinson {et al.} 1971,
pages 45--49},
year = "1971",
pages = "45--49",
note = {{See Wilkinson et al. 1971}}
}
@book{wilkinson1971linear,
title={Linear Algebra},
author={Wilkinson, J.H. and Reinsch, C. and Bauer, F.L.},
number={v. 10},
series={Die Grundlehren der mathematischen Wissenschaften in Einzeldarstellungen},
year={1971},
publisher={Springer-Verlag}
}
@Article{Smith:2001:AFS,
author = "David M. Smith",
title = "{Algorithm 814}: {Fortran 90} software for
floating-point multiple precision arithmetic, gamma and
related functions",
journal = "ACM Transactions on Mathematical Software (TOMS)",
volume = "27",
number = "4",
pages = "377--387",
month = dec,
year = "2001"
}
@Article{Smith:2011:AMP,
author = "David M. Smith",
title = "{Algorithm 911}: Multiple-Precision Exponential
Integral and Related Functions",
journal = "ACM Transactions on Mathematical Software (TOMS)",
volume = "37",
number = "4",
pages = "46:1--46:16",
month = feb,
year = "2011"
}
@Manual{FreePascal1993,
title = {Free Pascal: A 32, 64 and 16 bit professional Pascal compiler},
author = {{Free Pascal Team}},
year = {1993--2020},
address = {Fairfax, VA},
note = {{version} 3.2.0},
note = {{rrid} SCR_014360},
url = {https://www.freepascal.org/}
}
@Article{Wirth1971Pascal,
author = {Wirth, Niklaus},
title = {The Programming Language Pascal},
Journal = {Acta Informatica},
volume = {1},
year = {1971},
pages = {35--63}
}
@Article{nl2solDGW81,
Title = {An Adaptive Nonlinear Least-Squares Algorithm},
Author = {John E. Dennis and David M. Gay and Roy E. Welsch},
Journal = {ACM Transactions on Mathematical Software},
Volume = {7},
Number = {3},
Pages = {348--368},
Year = {1981}
}
@Manual{Deriv-manual,
title = {{Deriv}: R-based Symbolic Differentiation},
author = {Andrew Clausen and Serguei Sokol},
year = {2018},
note = {Deriv package version 3.8},
url = {https://CRAN.R-project.org/package=Deriv},
}
@Manual{ Ryacas-manual,
title = {Ryacas: R Interface to the Yacas Computer Algebra System},
author = {Rob Goedman and Gabor Grothendieck and Søren Højsgaard and Ayal Pinkus and Grzegorz Mazur and Mikkel Meyer Andersen},
year = {2019},
note = {R package version 0.4.1},
url = {https://CRAN.R-project.org/package=Ryacas},
}
@article{BatesWatts81,
author = {{Bates, Douglas M.} and {Watts, Donald G.}},
title = {A Relative Offset Orthogonality Convergence Criterion for Nonlinear least Squares},
journal = {Technometrics},
volume = {23},
number = {2},
pages = {179-183},
year = {1981}
}
@Article{bolkernonlin13,
Title = {Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS},
Author = {Bolker, Benjamin M. and Gardner, Beth and Maunder, Mark and Berg, Casper W. and Brooks, Mollie and Comita, Liza and Crone, Elizabeth and Cubaynes, Sarah and Davies, Trevor and de Valpine, Perry and Ford, Jessica and Gimenez, Olivier and Ke\'ry, Marc and Kim, Eun Jung and Lennert-Cody, Cleridy and Magnusson, Arni and Martell, Steve and Nash, John and Nielsen, Anders and Regetz, Jim and Skaug, Hans and Zipkin, Elise},
Journal = {Methods in Ecology and Evolution},
Year = {2013},
Note = {Report on special 2-session workshop at National Center for Ecological Analysis and Synthesis, Santa Barbara, CA in 2012. JNfile: 13-bolker-strategies.pdf},
Number = {6},
Pages = {501--512},
Volume = {4},
ISSN = {2041-210X}
}
@Misc{DalzellInterview1310,
Title = {{Optimization in R: A conversation with John Nash about optim and optimx}},
Author = {Dalzell, Catherine and Nash, John C.},
Month = {October},
Note = {Interview published in IBM Developerworks series. JNfile: Interview\-Optimization\_in\_R.pdf},
Year = {2013},
Url = {http://www.ibm.com/developerworks/library/ba\-optimR\-john\-nash/index.html}
}
@Misc{PORTlib,
Title = {The {Port Mathematical Subroutine Library}, Version 3},
Author = {Phyllis Fox},
Year = {1997},
Address = {Murray Hill, NJ},
Publisher = {AT\&T Bell Laboratories},
Url = {http://www.bell-labs.com/project/PORT/}
}
@Misc{Gil93,
Title = {p2c},
Author = {Dave Gillespie},
Year = {1993},
Address = {Boston, MA},
Publisher = {Free Software Foundation},
Url = {http://directory.fsf.org/project/p2c/}
}
@Misc{hjjncompstat98,
Title = {Numerical optimization with imprecise function evaluations},
Author = {Joe, Harry and Nash, John C.},
Note = {Slides for presentation July 26, 1998 at the Computational Statistics 98 Conference, Bristol, UK. JNfile: 980726JoeNashslides-compstat.pdf},
Year = {1998}
}
@Misc{SIAMOpt96JNHJ,
Title = {{Minimizing imprecisely computed functions}},
Author = {Joe, Harry and Nash, John C},
Month = {May},
Note = {Slides for a presentation at the Fifth SIAM Conference on Optimization, Victoria, BC, May 20-22, 1996. JNfile: SIAMOpt96JNHJSlides.pdf},
Year = {1996}
}
@Article{Magnussen16,
Title = {The relative performance of R, AD Model Builder, and BUGS for fitting nonlinear models},
Author = {Magnusson, Arni and Bolker, Benjamin M. and Gardner, Beth and Maunder, Mark and Berg, Casper W. and Brooks, Mollie and Comita, Liza and Crone, Elizabeth and Cubaynes, Sarah and Davies, Trevor and de Valpine, Perry and Ford, Jessica and Gimenez, Olivier and Ke\'ry, Marc and Kim, Eun Jung and Lennert-Cody, Cleridy and Martell, Steve and Nash, John and Nielsen, Anders and Regetz, Jim and Skaug, Hans and Zipkin, Elise},
Journal = {Methods in Ecology and Evolution},
Year = {2016},
Note = {Submitted early 2016 JNfile: 13-bolker-strategies.pdf},
ISSN = {2041-210X}
}
@Book{jnespssm84,
Title = { Effective scientific problem solving with small computers},
Author = {Nash, John C.},
Publisher = { Reston Publishing Company : Reston, Virginia },
Year = {1984 },
Note = { (front matter only) JNfile: 84summaryESPSSCbook.pdf},
ISBN = { },
Language = { English },
Type = { Book }
}
@Misc{jn120529Leuven,
Title = {{Optimization and nonlinear parameter estimation with R}},
Author = {Nash, John C.},
Month = {May},
Note = {Presented to the Faculty of Business \& Economics, KU-Leuven. JNfile: leuven120529.ppt},
Year = {2012}
}
@Misc{jn120801lehigh,
Title = {{Optimization and nonlinear parameter estimation with R}},
Author = {Nash, John C.},
Month = {August},
Note = {Presented at the MOPTA 2012 Conference, Lehigh University. While this has the same title as the Leuven talk in May, the treatment was very different. JNfile: mopta120731.pdf},
Year = {2012}
}
@Misc{RQtimes12,
Title = {{Timing Rayleigh Quotient minimization in R}},
Author = {Nash, John C.},
Month = {July},
Note = {This is a `tip' on http://rwiki.sciviews.org/doku.php?id=tips:rqcasestudy. The files related to this study are \url{http://macnash.telfer.uottawa.ca/~nashjc/RQtimes.pdf} and \url{http://macnash.telfer.uottawa.ca/~nashjc/RQtimes.Rnw}},
Year = {2012}
}
@Misc{jn100907r,
Title = {{R} -- an overview},
Author = {Nash, John C.},
Note = {Ottawa Canada Linux Users Group presentation. JNfile: 2010-OCLUG-R-100907.odp, 2010-OCLUG-R-100907.pdf},
Year = {2010},
Url = {http://devel.oclug.on.ca/wiki/MeetingPresentations2010}
}
@Misc{jntut-UseR2010,
Title = {Optimization and related nonlinear modelling computations in {R} (a 3-hour tutorial)},
Author = {Nash, John C.},
Month = {July},
Note = {2 page abstract, web site with materials and slides. JNfile: 2010-useR2010Nashtutorial.pdf, 2010-useR--2010--Tutorials.pdf, useR--2010--Optimization-and-related-nonlinear-modelling-computa.pdf},
Year = {2010},
Url = {http://user2010.org/program2010.pdf}
}
@Misc{NashR080610,
Title = {The {R} statistical computing system its uses, strengths and limitations},
Author = {Nash, John C.},
Month = {June},
Note = {Seminar presented at Transport Canada. JNfile: 2008R4Transport080610.pdf},
Year = {2008}
}
@Misc{NashR081022,
Title = {R: an open source statistical computing system, or {How} to avoid spending a fortune on quality statistical software},
Author = {Nash, John C.},
Month = {October},
Note = {Workshop presented at the Telfer School of Management, University of Ottawa. JNfile: 2008R-workshop-081022.pdf, 2008Poster-R-Workshop-22-10-2008.pdf},
Year = {2008}
}
@Misc{mopta01,
Title = {Numerical optimization and surface estimation with imprecise function evaluations},
Author = {Nash, John C.},
Month = {August},
Note = {Slides for presentation at the 2001 MOPTA (McMaster Optimization Theory and Applications) Conference, Hamilton, Aug 2-4, 2001. JNfile: 01-MOPTAO1JoeNash-slides.pdf},
Year = {2001}
}
@Misc{SSO950626,
Title = {{Optimization, Statistics and the Internet}},
Author = {Nash, John C.},
Month = {June},
Note = {Talk given to Statistical Society of Ottawa AGM, June 26, 1995. JNfile: SSO95AGMslides-optandstats.pdf},
Year = {1995}
}
@Misc{nash93argonnetalk,
Title = {Nonlinear function minimization on PCs: applications, models and software},
Author = {Nash, John C.},
Note = {Talk given to the Mathematics and Computer Science Division of the Argonne National Laboratory, March 12, 1993. JNfile: 93Argonne.pdf},
Year = {1993}
}
@Misc{jn91ICIAM,
Title = {Initial parameter values in nonlinear parameter determination},
Author = {Nash, John C.},
Month = {July},
Note = {Slides for a presentation to the 1991 International Congress for Industrial and Applied Mathematics, March 24-27, 1991. The presentation was given by Mary Nash as the author had food poisoning. JNfile: 910711ICIAM-initialparameters.pdf},
Year = {1991}
}
@Misc{jn1989gordonconf,
Title = {Appropriate statistical tools for progress-curve modelling of chemical reactions},
Author = {Nash, John C.},
Note = {Poster at 1989 Gordon Conference on Statistics in Chemistry and Chemical Engineering, Jul 31 - Aug 4, New Hampton School. JNfile: 89GordonConf-Appropriateswslides.pdf},
Year = {1989}
}
@Misc{jn89bostoncoll,
Title = {Nonlinear modelling},
Author = {Nash, John C.},
Note = {Talk at Boston College, Mathematics Department, March 31, 1989. JNfile: 89BostonCollege-nonlinearmodelling.pdf},
Year = {1989}
}
@Misc{88nonlinearmodelling,
Title = {Nonlinear modelling: choices facing users and developers of software},
Author = {John C. Nash},
Note = {Talks presented at DSIR Wellington on Feb 25, 1988, and Department of Mathematics, University of Waikato, May 10, 1988. Dept of Mathematics and Statistics, Auckland U, March 30, 1988. Also presented Oct 7, 1987, to the Agricultural Economics Department, University of New England, Armidale, Australia, and to the Melbourne CSIRO establishment Oct 21, 1987. A related talk "Software for nonlinear parameter determination: choices facing users and developers" was presented to the Mathematics Department of the University of Adelaide, Oct 16, 1987. JNfile: 8788Armidale-etc-nonlinearmodellingslides.pdf},
Year = {1988}
}
@Misc{88sscvictoria,
Title = {Stretching a software package to its limits: applications of a nonlinear estimation program suite},
Author = {John C. Nash},
Month = {June},
Note = {Poster presented at the 1988 Statistical Society of Canada conference in Victoria, BC. June 5-8, 1988. JNfile: 88sscvicposter.pdf, 88SSCVictoria-StretchingaComputerPackagetoitsLimits-sign.pdf},
Year = {1988}
}
@Misc{88TAMworkshop,
Title = {Limits to the application of nonlinear function minimisation and nonlinear least squares codes: can flexibility coexist with simplicity of use and efficiency of operation},
Author = {John C. Nash},
Note = {Talk to the Theoretical and Applied Mechanics workshop on April 27, 1988 ad the University of Aukland. JNfile: none.},
Year = {1988}
}
@Misc{jnSIAMOpt87,
Title = {Extensions of a parameter estimation package to approach global optimization},
Author = {John C. Nash},
Month = {May},
Note = {SIAM Conference on Optimization, Houston TX, May 18-20, 1987. Poster presentation. JNfile: 87SIAM-ModsofParamEsttoGlobalOpt-slides.pdf},
Year = {1987}
}
@Misc{jncarletonsem86,
Title = {Impact of implementation and computing environment on the performance of function minimization algorithms},
Author = {John C. Nash},
Month = {September},
Note = {Seminar to Department of Systems and Computer Engineering, September 24, 1986. JNfile: 860924CarletonSeminar.pdf},
Year = {1986}
}
@Misc{jn84Delaware,
Title = {Solving difficult parameter estimation problems with microcomputers},
Author = {Nash, John C.},
Month = {April},
Note = {Invited talk at "Microcomputers \& Statistics", Newark, Delaware, April 30, 1984. JNfile: 84-0430NewarkDelaware.pdf},
Year = {1984}
}
@Misc{jn76Cornell,
Title = {Function minimization with small computers},
Author = {Nash, John C.},
Month = {October},
Note = {JNfile: 76-FunctionMinwithSmallComputers-Cornell.pdf},
Year = {1976},
Publisher = {presented at an invited seminar at Cornell University}
}
@Book{jnmn94,
Title = {Scientific Computing with PCs },
Author = {Nash, John C. and Nash, Mary M.},
Publisher = { Nash Information Services Inc.: Ottawa },
Year = { 1994 },
Month = { November },
Note = {This was a rewriting of {Effective scientific problem solving with small computers, Reston, 1984}. JNfile: 94Nash-SCPCs.pdf},
ISBN = { },
Language = { English },
Pages = { 199 },
Type = { Book }
}
@Misc{jnmws89siam,
Title = {Performance of general purpose minimization software on {L-1} and {L-infinity} approximation problems},
Author = {Nash, John C. and Nash, Mary M.},
Note = {Poster at SIAM Optimization Conference, April 2-5, 1989. JNfile: SIAM89JN.pdf},
Year = {1989}
}
@Misc{jn1989mws-exprobs,
Title = {Example Problems and Software Extensions to accompany Nonlinear Parameter Estimation Methods: an Integrated System in BASIC},
Author = {Nash, John C. and Walker-Smith, Mary},
Note = {Includes software and documentation. JNfile: 87NLPEplus.zip. This is combined with the original book and files under 1987.},
Year = {1989},
Publisher = { Nash Information Services Inc.: Ottawa }
}
@Misc{jnmws87ssc,
Title = {Sensitivity of nonlinear parameters to estimation criteria: some selected examples and discussion},
Author = {John C. Nash and Mary Walker-Smith},
Month = {June},
Note = {Statistical Society of Canada annual meeting, Quebec, Poster presentation. JNfile: 87SSCjnmws-poster.pdf},
Year = {1987}
}
@Misc{Nielsen2000a,
Title = {{UCMINF} - an Algorithm for Unconstrained, Nonlinear Optimization},
Author = {H. B. Nielsen},
Month = {dec},
Year = {2000},
Institution = {{IMM,} {DTU}},
Isbn_issn = {IMM-REP-2000-19},
Pages = {24},
Url = {http://www2.imm.dtu.dk/pubdb/p.php?642}
}
@Manual{p-ucminf,
Title = {\emph{ucminf}: General-Purpose Unconstrained Non-linear Optimization},
Author = {Hans Bruun Nielsen and Stig Bousgaard Mortensen},
Note = {R package version 1.0-5},
Organization = {R Foundation for Statistical Computing},
Year = {2009}
}
@Misc{genstat,
Title = {GenStat for Windows (12th Edition) Introduction},
Author = {R.W. Payne and D.A. Murray and S.A. Harding and D.B. Baird and D.M. Soutar},
Year = {2009},
Address = {Hemel Hempstead},
Publisher = {VSN International}
}
@Misc{Powell09,
Title = {{The BOBYQA algorithm for bound constrained optimization without derivatives}},
Author = {Powell, M. J. D.},
Month = aug,
Year = {2009},
Url = {http://www.damtp.cam.ac.uk/user/na/NA_papers/NA2009_06.pdf}
}
@Misc{stata,
Title = {Stata Statistical Software: Release 11},
Author = {StataCorp},
Year = {2009},
Address = {College Station, TX},
Publisher = {StataCorp LP}