/
__init__.py
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/
__init__.py
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# @Created Date: 2020-05-13 08:54:03 pm
# @Filename: __init__.py
# @Email: 1730416009@stu.suda.edu.cn
# @Author: ZeFeng Zhu
# @Last Modified: 2023-03-30 01:26:50 pm
# @Copyright (c) 2020 MinghuiGroup, Soochow University
__version__ = '0.4.4'
def default_config(folder='./'):
from pdb_profiling.log import Abclog
# from pdb_profiling.fetcher import webfetch
from pdb_profiling.processors.pdbe.record import Base, PDB
# from pdb_profiling.processors.pdbe import api as pdbe_api
from pdb_profiling.processors.proteins.record import Identifier
from pdb_profiling.processors.uniprot.api import UniProtINFO, UniProtAPI
from pdb_profiling.processors.uniprot.record import UniProts
from pdb_profiling.processors.i3d.api import Interactome3D
from pdb_profiling.processors.swissmodel.api import SMR
# Use Existing Handled PDBe API Results (e.g. tsv format results)
# pdbe_api.ensure.use_existing = True # default
# Use Existing API Results (e.g. json format results downloaded from web)
# webfetch.ensure.use_existing = True # default
# Init Abclog Logger
Abclog.init_logger(logName='PDB-Profiling')
# Set WebFetcher's Semaphore
Base.set_web_semaphore(30).result()
Base.set_rcsb_web_semaphore(6).result()
Identifier.set_web_semaphore(25).result()
UniProtINFO.set_web_semaphore(30).result()
UniProtAPI.set_web_semaphore(30).result()
Interactome3D.set_web_semaphore(30).result()
SMR.set_web_semaphore(30).result()
# Set Folder that store downloaded and handled files
Base.set_folder(folder)
PDB.set_folder(folder)
Identifier.set_folder(folder)
UniProtINFO.set_folder(folder)
UniProtAPI.set_folder(folder)
UniProts.set_folder(folder)
Interactome3D.set_folder(folder)
SMR.set_folder(folder)