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Joining of intron features #46

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sophietandonnet opened this issue Oct 16, 2019 · 1 comment · Fixed by #47
Closed

Joining of intron features #46

sophietandonnet opened this issue Oct 16, 2019 · 1 comment · Fixed by #47

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@sophietandonnet
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Currently EMBLmyGFF3 joins intron entries. Here is an example of joined introns:

FT   intron          join(6625..6675,6797..6841,6924..6966,7119..7161,
FT                   7245..7286,7423..7476,7630..7673,7750..7962,8110..8158,
FT                   8225..8265,8365..8407)
FT                   /locus_tag="LOCUS1"
FT                   /note="source:AUGUSTUS"

As this does not make sense biologically, this issue should be fixed in later versions.
@Juke34
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Juke34 commented Oct 17, 2019

Thank you for using our tool and reporting the issue.
Here for an access to a data test: https://www.biostars.org/p/403402/#403438

Juke34 added a commit that referenced this issue Oct 18, 2019
@Juke34
specify CDS as the only type of feature to combine. Fix #46
0a02ac3
@Juke34 Juke34 mentioned this issue Oct 18, 2019
Merged
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Feature/1.3 NBISweden/EMBLmyGFF3
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@sophietandonnet @Juke34