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tt_kmer_ref_compare_wnode.cwl
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tt_kmer_ref_compare_wnode.cwl
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cwlVersion: v1.0
label: "kmer_ref_compare_wnode"
# File: task_types/tt_kmer_ref_compare_wnode.cwl
# this probably should be kmer_ref_compare_wnode12 where 2 is the number of files in input manifest 1 is the input file
class: Workflow # task type
hints:
DockerRequirement:
dockerPull: ncbi/gpdev:latest
inputs:
kmer_file_list: File[]
ref_kmer_file_list: File[]
dist_method: string
minhash_signature: string
score_method: string
outputs:
distances:
type: File
outputSource: gpx_make_outputs/output_file
steps:
submit_kmer_compare:
run: ../progs/submit_kmer_compare.cwl
in:
kmer_file_list: kmer_file_list
ref_kmer_file_list: ref_kmer_file_list
out: [output]
kmer_compare_wnode:
run: ../progs/kmer_compare_wnode.cwl
in:
jobs: submit_kmer_compare/output
dist_method: dist_method
minhash_signature: minhash_signature
score_method: score_method
out: [outdir]
gpx_make_outputs:
run: ../progs/gpx_make_outputs.cwl
in:
input_path: kmer_compare_wnode/outdir
num_partitions:
default: 1
output:
default: "distances.##.gz"
output_glob:
default: "distances.*.gz"
out: [output_file]