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key_types.json
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key_types.json
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{
"Adapters": "File",
"AlignEnvProfile": "File",
"AlignHardMemLimit": "MemoryString",
"AlignSoftMemLimit": "MemoryString",
"AlignmentScript": "File",
"AnnotateText": "String",
"BashPreamble": "File",
"BashSharedFunctions": "File",
"Bqsr": "Boolean",
"BqsrEnvProfile": "File",
"BqsrHardMemLimit": "MemoryString",
"BqsrKnownSites": "String",
"BqsrScript": "File",
"BqsrSoftMemLimit": "MemoryString",
"BWAExtraOptionsString": "String",
"CenterName": "String",
"ChunkSizeInBases": "Integer",
"CutAdapt": "Directory",
"CutAdaptThreads": "Integer",
"DBSNP": "File",
"DBSNPIdx": "File",
"DedupEnvProfile": "File",
"DedupHardMemLimit": "MemoryString",
"DedupSoftMemLimit": "MemoryString",
"DebugMode": "DebugMode",
"DedupScript": "File",
"DeliveryAlignment_Script": "File",
"DeliveryHaplotyperVC_Script": "File",
"DeliveryFolder_Alignment": "OutputDirectory",
"DeliveryFolder_HaplotyperVC": "OutputDirectory",
"HaplotyperEnvProfile": "File",
"HaplotyperExtraOptionsString": "String",
"HaplotyperHardMemLimit": "MemoryString",
"HaplotyperScript": "File",
"HaplotyperSoftMemLimit": "MemoryString",
"MarkDuplicates": "Boolean",
"MergeBamEnvProfile": "File",
"MergeBamScript": "File",
"MergeHardMemLimit": "MemoryString",
"MergeSoftMemLimit": "MemoryString",
"NormalInputReads": "[File]",
"TumorInputReads": "[File]",
"Library": "String",
"PairedEnd": "Boolean",
"Platform": "String",
"PlatformUnit": "[String]",
"RealignEnvProfile": "File",
"RealignHardMemLimit": "MemoryString",
"RealignmentKnownSites": "String",
"RealignmentScript": "File",
"RealignSoftMemLimit": "MemoryString",
"Ref": "File",
"RefAmb": "File",
"RefAnn": "File",
"RefBwt": "File",
"RefDict": "File",
"RefFai": "File",
"RefPac": "File",
"RefSa": "File",
"SampleName": "String",
"Sentieon": "String",
"SentieonThreads": "Integer",
"Threads": "Integer",
"TrimEnvProfile": "File",
"TrimHardMemLimit": "MemoryString",
"Trimming": "Boolean",
"TrimSeqScript": "File",
"TrimSoftMemLimit": "MemoryString",
"VqsrEnvProfile": "File",
"VqsrIndelResourceString": "String",
"Vqsr": "Boolean",
"VqsrHardMemLimit": "MemoryString",
"VqsrScript": "File",
"VqsrSnpResourceString": "String",
"VqsrSoftMemLimit": "String",
"WorkflowJson": "File",
"Bcftools": "String",
"Bgzip": "String",
"DeliveryFolder_SomaticVC": "String",
"DeliverySomaticVC_Script": "File",
"GatkJar": "String",
"Java": "String",
"JavaMemOption": "String",
"MergeSomaticVcfEnvProfile": "File",
"MergeSomaticVcfScript": "File",
"MutectEnvProfile": "File",
"MutectExtraOptionsString": "String",
"MutectHardMemLimit": "String",
"MutectJavaMemOption": "String",
"MutectScript": "File",
"MutectSoftMemLimit": "String",
"MutectThreads": "String",
"SampleNameNormal": "String",
"SampleNameTumor": "String",
"Samtools": "String",
"Strelka": "String",
"StrelkaEnvProfile": "File",
"StrelkaExtraOptionsString": "String",
"StrelkaHardMemLimit": "String",
"StrelkaScript": "File",
"StrelkaSoftMemLimit": "String",
"StrelkaThreads": "String",
"CombineVariantsEnvProfile": "File",
"CombineVariantsExtraOptionsString": "String",
"CombineVariantsHardMemLimit": "String",
"CombineVariantsScript": "File",
"CombineVariantsSoftMemLimit": "String",
"CombineVariantsThreads": "String",
"IndelGtFixPerlScript": "File",
"SnpGtFixPerlScript": "File",
"PrioritizationOptionString": "String",
"VqsrSoftMemLimit": "MemoryString",
"WorkflowJson": "File",
}