FFPopSim
haploid_highd offers a number of methods, listed below. Global functions related to haploid_highd are shown after the methods.
haploid_highd
haploid_highd.__init__
haploid_highd.__str__
haploid_highd.__repr__
haploid_highd.copy
haploid_highd.dump
haploid_highd.status
haploid_highd.L
haploid_highd.number_of_loci
haploid_highd.N
haploid_highd.population_size
haploid_highd.generation
haploid_highd.number_of_clones
haploid_highd.number_of_traits
haploid_highd.max_fitness
haploid_highd.participation_ratio
haploid_highd.circular
haploid_highd.carrying_capacity
haploid_highd.recombination_model
haploid_highd.outcrossing_rate
haploid_highd.crossover_rate
haploid_highd.mutation_rate
haploid_highd.trait_weights
haploid_highd.get_clone(n)
haploid_highd.set_wildtype(N)
haploid_highd.set_allele_frequencies(frequencies, N)
haploid_highd.set_genotypes(genotypes, counts)
haploid_highd.evolve(gen=1)
haploid_highd.bottleneck(size_of_bottleneck)
haploid_highd.flip_single_locus(locus)
haploid_highd.calc_stat()
haploid_highd.get_divergence_statistics(n_sample)
haploid_highd.get_diversity_statistics(n_sample)
haploid_highd.get_trait_statistics(t)
haploid_highd.get_fitness_statistics()
haploid_highd.get_trait_covariance(t1, t2)
haploid_highd.get_allele_frequency(locus)
haploid_highd.get_allele_frequencies()
haploid_highd.get_pair_frequency(locus1, locus2)
haploid_highd.get_chi(locus)
haploid_highd.get_chi2(locus1, locus2)
haploid_highd.get_LD(locus1, locus2)
haploid_highd.get_moment(locus1, locus2)
haploid_highd.add_genotype(genotype, n=1)
haploid_highd.get_trait_additive(t)
haploid_highd.clear_trait(t)
haploid_highd.clear_traits()
haploid_highd.clear_fitness()
haploid_highd.set_trait_additive(coefficients, t)
haploid_highd.set_fitness_additive(coefficients)
haploid_highd.add_trait_coefficient(value, loci, t=0)
haploid_highd.add_fitness_coefficient(value, loci)
haploid_highd.get_trait_epistasis(t=0)
haploid_highd.set_random_trait_epistasis(epistasis_std, t=0)
haploid_highd.set_random_epistasis(epistasis_std)
haploid_highd.get_fitness(n)
haploid_highd.get_fitnesses
haploid_highd.get_trait(n, t=0)
haploid_highd.get_traits
haploid_highd.get_clone_size(n)
haploid_highd.get_clone_sizes
haploid_highd.get_genotype(n)
haploid_highd.get_genotypes
haploid_highd.unique_clones()
haploid_highd.distance_Hamming
haploid_highd.random_genomes
haploid_highd.random_clone()
haploid_highd.random_clones
haploid_highd.get_fitness_histogram
haploid_highd.plot_fitness_histogram
haploid_highd.get_divergence_histogram
haploid_highd.plot_divergence_histogram
haploid_highd.get_diversity_histogram
haploid_highd.plot_diversity_histogram
haploid_highd.genealogy
haploid_highd.track_locus_genealogy(loci)
Global functions related to haploid_highd
load_haploid_highd