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'Unexpected value of transcript_strand in MAF file' #61

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yunhuip opened this issue Jan 21, 2021 · 0 comments
Open

'Unexpected value of transcript_strand in MAF file' #61

yunhuip opened this issue Jan 21, 2021 · 0 comments

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@yunhuip
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yunhuip commented Jan 21, 2021

mutagene -v rank -i test.maf -g hg38 -c gcb_lymphomas -p test.profile
WARNING Parsing MAF failed. Check that the input file is in MAF format or specify a different format using option -f
ValueError('Unexpected value of transcript_strand in MAF file')

mutagene report error when transcript_strand is not available in some lines of input MAF files.

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