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berlin_make_montage.m
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berlin_make_montage.m
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% THIS IS FIRST MEASUREMENTS
% set correct directory for file before
if 1 == 1
% set correct directory for file before
cd /auge22/plfp1/con_files/
hdr = ft_read_header('plfp03.0200.con');
label =hdr.label
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG157';
label{141}='EEG159';
label{142}='EEG160';
label = label(1:142);
% save('/auge22/plfp1_spm/SPM/berlin_channels_alt_test.mat','label');
save('/auge22/plfp1_spm/SPM/berlin_channels_alt.mat','label');
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R01',...
'LFP_R12',...
'LFP_R23',...
'LFP_L01',...
'LFP_L12',...
'LFP_L23',...
'EMG_R',...
'EMG_L',...
'ECG'
}'];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG133', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG134', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG134', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG135', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG135', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG136', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L01', montage.labelnew), strmatch('EEG130', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG130', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG131', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG131', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG132', montage.labelorg)) = -1;
%
% montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG137', montage.labelorg)) = 1;
% montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG138', montage.labelorg)) = -1;
%
% montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG139', montage.labelorg)) = 1;
% montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG140', montage.labelorg)) = -1;
%
% hardware wrong
montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG139', montage.labelorg)) = 1;
montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG140', montage.labelorg)) = -1;
montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG137', montage.labelorg)) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG138', montage.labelorg)) = -1;
% save('/auge22/plfp1_spm/SPM/berlin_montage_alt_test','montage');
save('/auge22/plfp1_spm/SPM/berlin_montage_alt','montage');
end
% THIS IS AFTER PLUG EXCHANGE
% set correct directory for file before
if 1 == 1
cd /auge22/plfp1/con_files/
hdr = ft_read_header('plfp11.0200.con');
label =hdr.label
label{126}='EEG143';
label{127}='EEG144';
label{128}='EEG145';
label{129}='EEG146';
label{130}='EEG147';
label{131}='EEG148';
label{132}='EEG149';
label{133}='EEG150';
label{134}='EEG151';
label{135}='EEG152';
label{136}='EEG153';
label{137}='EEG154';
label{138}='EEG155';
label{139}='EEG156';
label{140}='EEG157';
label{141}='EEG159';
label{142}='EEG160';
label = label(1:142);
save('/auge22/plfp1_spm/SPM/berlin_channels.mat','label');
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R01',...
'LFP_R12',...
'LFP_R23',...
'LFP_L01',...
'LFP_L12',...
'LFP_L23',...
'EMG_R',...
'EMG_L',...
'ECG'
}'];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG149', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG150', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG150', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG151', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG151', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG152', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L01', montage.labelnew), strmatch('EEG146', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG146', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG147', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG147', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG148', montage.labelorg)) = -1;
% montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG143', montage.labelorg)) = 1;
% montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG144', montage.labelorg)) = 1;
% hardware wrong
montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG144', montage.labelorg)) = 1;
montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG143', montage.labelorg)) = 1;
save('/auge22/plfp1_spm/SPM/berlin_montage','montage');
end
% THIS IS FOR DYST PATIENTS w/o DBS
% set correct directory for file before
if 1 == 0
cd /auge22/dyst/DYST01/
hdr = ft_read_header('dyst01.0200.con');
label =hdr.label
label{126}='EEG143';
label{127}='EEG144';
label{128}='EEG145';
label{129}='EEG146';
label{130}='EEG147';
label{131}='EEG148';
label{132}='EEG149';
label{133}='EEG150';
label{134}='EEG151';
label{135}='EEG152';
label{136}='EEG153';
label{137}='EEG154';
label{138}='EEG155';
label{139}='EEG156';
label{140}='EEG157';
label{141}='EEG159';
label{142}='EEG160';
label = label(1:142);
save('/auge22/dyst/SPM/berlin_channels_dyst.mat','label');
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R01',...
'LFP_R12',...
'LFP_R23',...
'LFP_L01',...
'LFP_L12',...
'LFP_L23',...
'EMG_R',...
'EMG_L',...
'ECG'
}'];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG149', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R01', montage.labelnew), strmatch('EEG150', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG150', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R12', montage.labelnew), strmatch('EEG151', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG151', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), strmatch('EEG152', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L01', montage.labelnew), strmatch('EEG146', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG146', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), strmatch('EEG147', montage.labelorg)) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG147', montage.labelorg)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), strmatch('EEG148', montage.labelorg)) = -1;
montage.tra(strmatch('EMG_L', montage.labelnew), strmatch('EEG143', montage.labelorg)) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), strmatch('EEG144', montage.labelorg)) = 1;
montage.tra(strmatch('ECG', montage.labelnew), strmatch('EEG145', montage.labelorg)) = 1;
save('/auge22/dyst/SPM/berlin_montage_dyst','montage');
end