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berlin_make_montage_bostsci_seg_ringV2.m
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berlin_make_montage_bostsci_seg_ringV2.m
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function [out, label] = berlin_make_montage_bostsci_seg_ring(dir, initials, block)
% THIS IS FOR PLFP with Boston Scientific Segmented electrode
% set correct directory for file before
switch initials
case 'PLFP41'
hdr = ft_read_header([ dir '/' initials '/RAW/on/Raw/' lower(initials) block '.con']); % plfp41.0100.con
label =hdr.label
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
% Boston Scientific segmented
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R18',...
'LFP_R23',...
'LFP_R24',...
'LFP_R25',...
'LFP_R34',...
'LFP_R36',...
'LFP_R47',...
'LFP_R56',...
'LFP_R57',...
'LFP_R67',...
'LFP_L18',...
'LFP_L23',...
'LFP_L24',...
'LFP_L25',...
'LFP_L34',...
'LFP_L36',...
'LFP_L47',...
'LFP_L56',...
'LFP_L57',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 16+13 23-16 24-16 17-16];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(1)) = 1;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(4)) = -1;
% ri5 not present in plfp41, is trigger signal, remove differences with ri5.
% montage.tra(strmatch('LFP_R25', montage.labelnew), indr(2)) = 1;
% montage.tra(strmatch('LFP_R25', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(7)) = -1;
% ri5 not present in plfp41, is trigger signal, emove differences with ri5.
% montage.tra(strmatch('LFP_R56', montage.labelnew), indr(5)) = 1;
% montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = -1;
% montage.tra(strmatch('LFP_R57', montage.labelnew), indr(5)) = 1;
% montage.tra(strmatch('LFP_R57', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = -1;
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[2 15 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case 'PLFP42'
hdr = ft_read_header([ dir '/' initials '/RAW/on/Raw/' lower(initials) block '.con']); % plfp42.0100.con
label =hdr.label
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
% Boston Scientific segmented
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R18',...
'LFP_R23',...
'LFP_R24',...
'LFP_R25',...
'LFP_R34',...
'LFP_R36',...
'LFP_R47',...
'LFP_R56',...
'LFP_R57',...
'LFP_R67',...
'LFP_L18',...
'LFP_L23',...
'LFP_L24',...
'LFP_L25',...
'LFP_L34',...
'LFP_L36',...
'LFP_L47',...
'LFP_L56',...
'LFP_L57',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 22-16 23-16 24-16 17-16];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(1)) = 1;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = -1;
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[2 15 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case 'PLFP43'
hdr = ft_read_header([ dir '/' initials '/RAW/on/Raw/' lower(initials) block '.con']); % plfp43.0200.con / plfp43.0400.con
% depending on block code different behavior
label =hdr.label
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
% Boston Scientific segmented
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R18',...
'LFP_R23',...
'LFP_R24',...
'LFP_R25',...
'LFP_R34',...
'LFP_R36',...
'LFP_R47',...
'LFP_R56',...
'LFP_R57',...
'LFP_R67',...
'LFP_L18',...
'LFP_L23',...
'LFP_L24',...
'LFP_L25',...
'LFP_L34',...
'LFP_L36',...
'LFP_L47',...
'LFP_L56',...
'LFP_L57',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 17-16 22-16 23-16 24-16];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(1)) = 1;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = -1;
% montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = 1;
% montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
% montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
% montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
% montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
% montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
% montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = -1;
% plfp43 block 0200 has reference left2 due to saturation
if strcmp(block,'.0200')
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(1) ) = 1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8)) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = 1;
end
if strcmp(block,'.0400')
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
end
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[2 14 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case 'PLFP44'
hdr = ft_read_header([ dir '/' initials '/RAW/on/Raw/' lower(initials) block '.con']); % plfp44.0100.con
label =hdr.label
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
% Boston Scientific segmented
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R18',...
'LFP_R23',...
'LFP_R24',...
'LFP_R25',...
'LFP_R34',...
'LFP_R36',...
'LFP_R47',...
'LFP_R56',...
'LFP_R57',...
'LFP_R67',...
'LFP_L18',...
'LFP_L23',...
'LFP_L24',...
'LFP_L25',...
'LFP_L34',...
'LFP_L36',...
'LFP_L47',...
'LFP_L56',...
'LFP_L57',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 17-16 22-16 23-16 24-16];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(1)) = 1;
montage.tra(strmatch('LFP_R18', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = -1;
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[2 14 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case 'PLFP45'
hdr = ft_read_header([ dir '/' initials '/' lower(initials) block '.con']); % plfp45.0100.con
label =hdr.label
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
'LFP_R01',...
'LFP_R12',...
'LFP_R23',...
'LFP_R34',...
'LFP_R45',...
'LFP_R56',...
'LFP_R67',...
'LFP_L01',...
'LFP_L12',...
'LFP_L23',...
'LFP_L34',...
'LFP_L45',...
'LFP_L56',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 17-16 22-16 23-16 24-16];
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
montage.tra(strmatch('LFP_R01', montage.labelnew), indr(1)) = 1;
montage.tra(strmatch('LFP_R01', montage.labelnew), indr(2)) = -1;
montage.tra(strmatch('LFP_R12', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R12', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R45', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R45', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_L01', montage.labelnew), indl(1)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L12', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L45', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L45', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(8)) = -1;
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[2 14 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case 'PLFP46'
hdr = ft_read_header([ dir '/' initials '/' lower(initials) block '.con']); % plfp45.0100.con
label =hdr.label;
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';
label{147}='EEG150';
label{148}='EEG151';
label{149}='EEG152';
label{150}='EEG153';
label{151}='EEG154';
label{152}='EEG155';
label{153}='EEG156';
label{154}='EEG157';
label{155}='EEG158';
label{156}='EEG159';
label{157}='EEG160';
label = label(1:157);
% Boston Scientific segmented
montage = [];
montage.labelorg = label;
montage.labelnew = label(1:125);
montage.labelnew = [montage.labelnew;{...
% 'LFP_R18',... r8 missing due to signal problems
'LFP_R23',...
'LFP_R24',...
'LFP_R25',...
'LFP_R34',...
'LFP_R36',...
'LFP_R47',...
'LFP_R56',...
'LFP_R57',...
'LFP_R67',...
'LFP_L18',...
'LFP_L23',...
'LFP_L24',...
'LFP_L25',...
'LFP_L34',...
'LFP_L36',...
'LFP_L47',...
'LFP_L56',...
'LFP_L57',...
'LFP_L67',...
'EMG_R',...
'EMG_L',...
'ECG',...
'RESP'
}'];
% difference index
% ind_1 = [1, 2, 2, 2, 3, 3, 4, 5, 5, 6]
% ind_2 = [8, 3, 4, 5, 4, 6, 7, 6, 7, 7]
% NOTE special case l18= single channel, as reference was in channel 1
% input socket index for left side
indl = 125+[17 18 19 20 21 22 23 24];
% input socket for right side
indr = 125+[16+9 16+10 16+11 16+12 17-16 18-16 19-16]; % 24-16]; r8 missing due to signal problems
montage.tra = eye(125);
montage.tra(length(montage.labelnew), length(montage.labelorg)) = 0;
% r8 missing due to signal problems
% montage.tra(strmatch('LFP_R18', montage.labelnew), indr(1)) = 1;
% montage.tra(strmatch('LFP_R18', montage.labelnew), indr(8)) = -1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R23', montage.labelnew), indr(3)) = -1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R24', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(2)) = 1;
montage.tra(strmatch('LFP_R25', montage.labelnew), indr(5)) = -1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R34', montage.labelnew), indr(4)) = -1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(3)) = 1;
montage.tra(strmatch('LFP_R36', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(4)) = 1;
montage.tra(strmatch('LFP_R47', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R56', montage.labelnew), indr(6)) = -1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(5)) = 1;
montage.tra(strmatch('LFP_R57', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(6)) = 1;
montage.tra(strmatch('LFP_R67', montage.labelnew), indr(7)) = -1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(1) ) = 1;
montage.tra(strmatch('LFP_L18', montage.labelnew), indl(8) ) = -1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L23', montage.labelnew), indl(3)) = -1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L24', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(2)) = 1;
montage.tra(strmatch('LFP_L25', montage.labelnew), indl(5)) = -1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L34', montage.labelnew), indl(4)) = -1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(3)) = 1;
montage.tra(strmatch('LFP_L36', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(4)) = 1;
montage.tra(strmatch('LFP_L47', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L56', montage.labelnew), indl(6)) = -1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(5)) = 1;
montage.tra(strmatch('LFP_L57', montage.labelnew), indl(7)) = -1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(6)) = 1;
montage.tra(strmatch('LFP_L67', montage.labelnew), indl(7)) = -1;
% 'ECG','EMGl','EMGr','Resp',
ind_per = 125+[6 14 16 5];
montage.tra(strmatch('EMG_L', montage.labelnew), ind_per(2) ) = 1;
montage.tra(strmatch('EMG_R', montage.labelnew), ind_per(3) ) = 1;
montage.tra(strmatch('ECG', montage.labelnew), ind_per(1) ) = 1;
montage.tra(strmatch('RESP', montage.labelnew), ind_per(4) ) = 1;
out.montage = montage;
case {'PLFP47', 'PLFP48'}
hdr = ft_read_header([ dir '/' initials '/' lower(initials) block '.con']); % plfp45.0100.con
label =hdr.label;
% read all channels to avoid errors, use empty channel for event data
label{126}='EEG129';
label{127}='EEG130';
label{128}='EEG131';
label{129}='EEG132';
label{130}='EEG133';
label{131}='EEG134';
label{132}='EEG135';
label{133}='EEG136';
label{134}='EEG137';
label{135}='EEG138';
label{136}='EEG139';
label{137}='EEG140';
label{138}='EEG141';
label{139}='EEG142';
label{140}='EEG143';
label{141}='EEG144';
label{142}='EEG145';
label{143}='EEG146';
label{144}='EEG147';
label{145}='EEG148';
label{146}='EEG149';