Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Ignore empty slices in slice-wise motion correction (or registration) #2805

Open
jcohenadad opened this issue Jul 20, 2020 · 0 comments
Open

Ignore empty slices in slice-wise motion correction (or registration) #2805

jcohenadad opened this issue Jul 20, 2020 · 0 comments
Labels
enhancement category: improves performance/results of an existing feature priority:LOW sct_dmri_moco context: sct_fmri_moco context: user requested Raised by user on the SCT forum/email/GitHub. Be sure to notify them when fixed in a release.

Comments

@jcohenadad
Copy link
Member

When there is an empty slice, slice-wise motion correction crashes, as seen here: http://forum.spinalcordmri.org/t/error-when-running-sct-dmri-moco/440

It would be easy, before calling ANTs command, to check if the slice is empty. If it is, skip this slice and put "zero" motion coefficients.
@jcohenadad jcohenadad added sct_dmri_moco context: sct_fmri_moco context: enhancement category: improves performance/results of an existing feature labels Jul 20, 2020
@joshuacwnewton joshuacwnewton added the user requested Raised by user on the SCT forum/email/GitHub. Be sure to notify them when fixed in a release. label Jun 1, 2021
@jcohenadad jcohenadad added good first issue Issues that new contributors can easily work on priority:LOW labels Sep 8, 2022
@joshuacwnewton joshuacwnewton removed the good first issue Issues that new contributors can easily work on label Jan 30, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement category: improves performance/results of an existing feature priority:LOW sct_dmri_moco context: sct_fmri_moco context: user requested Raised by user on the SCT forum/email/GitHub. Be sure to notify them when fixed in a release.
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jcohenadad @joshuacwnewton