Notable changes include:
- Feature: Add QC report for
sct_deepseg
. View pull request - Feature: Add CanProCo-based MS lesion segmentation model to
sct_deepseg
. View pull request - Feature: Add EPI-BOLD fMRI spinal cord segmentation model to
sct_deepseg
. View pull request - Enhancement: Update
contrast-agnostic
SC segmentation model (sct_deepseg
) to the latest version (v2.3). View pull request - Enhancement: Switch to using mean magnitude for output
moco_params.tsv
file used for QC. View pull request - Documentation: Add links to new 2024 SCT review paper to prominent locations in documentation. View pull request
Full release notes and Changelog
Results of batch_processing.sh
on Ubuntu 20.04
~~~
Version: git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on: Linux fv-az1533-44 5.15.0-1061-azure
Duration: 0hrs 16min 46sec
---
t2/csa_c2c3.csv: 73.87680055661444 [Row 1, MEAN(area)]
t2/csa_pmj.csv: 73.89183952519573 [Row 1, MEAN(area)]
t2/csa_pam50.csv: 34.23530312082996 [Row 39, MEAN(area)]
t2s/csa_gm.csv: 12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv: 64.93314479093739 [Row 4, MEAN(area)]
mt/mtr_in_wm.csv: 54.417007086785446 [Row 1, MAP()]
dmri/fa_in_cst.csv: 0.7758118462499376 [Row 1, WA()]
dmri/fa_in_cst.csv: 0.773312472697186 [Row 2, WA()]
~~~
Results of batch_processing.sh
on macOS 12 (Monterey)
~~~
Version: git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on: Darwin Mac-1714066641279.local 21.6.0
Duration: 0hrs 21min 32sec
---
t2/csa_c2c3.csv: 73.87095978136215 [Row 1, MEAN(area)]
t2/csa_pmj.csv: 73.89183952519573 [Row 1, MEAN(area)]
t2/csa_pam50.csv: 34.23530312082996 [Row 39, MEAN(area)]
t2s/csa_gm.csv: 12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv: 64.93314479093739 [Row 4, MEAN(area)]
mt/mtr_in_wm.csv: 54.41827867818828 [Row 1, MAP()]
dmri/fa_in_cst.csv: 0.7761900744878227 [Row 1, WA()]
dmri/fa_in_cst.csv: 0.7765149211365178 [Row 2, WA()]
~~~
Results of batch_processing.sh
on Windows 2022
~~~
Version: git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on: MINGW64_NT-10.0-20348 fv-az1105-632 3.4.10-87d57229.x86_64
Duration: 0hrs 22min 13sec
---
t2/csa_c2c3.csv: 73.87680055661444 [Row 1, MEAN(area)]
t2/csa_pmj.csv: 73.89183952519573 [Row 1, MEAN(area)]
t2/csa_pam50.csv: 34.23530312082996 [Row 39, MEAN(area)]
t2s/csa_gm.csv: 12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv: 64.93314479093739 [Row 4, MEAN(area)]
mt/mtr_in_wm.csv: 54.417007086785446 [Row 1, MAP()]
dmri/fa_in_cst.csv: 0.7758118462499376 [Row 1, WA()]
dmri/fa_in_cst.csv: 0.773312472697186 [Row 2, WA()]
~~~