6.3

Notable changes include:

• Feature: Add QC report for sct_deepseg. View pull request
• Feature: Add CanProCo-based MS lesion segmentation model to sct_deepseg. View pull request
• Feature: Add EPI-BOLD fMRI spinal cord segmentation model to sct_deepseg. View pull request
• Enhancement: Update contrast-agnostic SC segmentation model (sct_deepseg) to the latest version (v2.3). View pull request
• Enhancement: Switch to using mean magnitude for output moco_params.tsv file used for QC. View pull request
• Documentation: Add links to new 2024 SCT review paper to prominent locations in documentation. View pull request

Full release notes and Changelog

Results of batch_processing.sh on Ubuntu 20.04

~~~
Version:         git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on:          Linux fv-az1533-44 5.15.0-1061-azure
Duration:        0hrs 16min 46sec
---
t2/csa_c2c3.csv:     73.87680055661444  [Row 1, MEAN(area)]
t2/csa_pmj.csv:      73.89183952519573  [Row 1, MEAN(area)]
t2/csa_pam50.csv:    34.23530312082996  [Row 39, MEAN(area)]
t2s/csa_gm.csv:      12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv:      64.93314479093739  [Row 4, MEAN(area)]
mt/mtr_in_wm.csv:    54.417007086785446 [Row 1, MAP()]
dmri/fa_in_cst.csv:  0.7758118462499376 [Row 1, WA()]
dmri/fa_in_cst.csv:  0.773312472697186  [Row 2, WA()]
~~~

Results of batch_processing.sh on macOS 12 (Monterey)

~~~
 Version:         git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on:          Darwin Mac-1714066641279.local 21.6.0
Duration:        0hrs 21min 32sec
---
t2/csa_c2c3.csv:     73.87095978136215  [Row 1, MEAN(area)]
t2/csa_pmj.csv:      73.89183952519573  [Row 1, MEAN(area)]
t2/csa_pam50.csv:    34.23530312082996  [Row 39, MEAN(area)]
t2s/csa_gm.csv:      12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv:      64.93314479093739  [Row 4, MEAN(area)]
mt/mtr_in_wm.csv:    54.41827867818828  [Row 1, MAP()]
dmri/fa_in_cst.csv:  0.7761900744878227 [Row 1, WA()]
dmri/fa_in_cst.csv:  0.7765149211365178 [Row 2, WA()]
~~~

Results of batch_processing.sh on Windows 2022

~~~
 Version:         git-HEAD-f0e3766f4d663d28fbb6b718cd0f76bd203a0971
Ran on:          MINGW64_NT-10.0-20348 fv-az1105-632 3.4.10-87d57229.x86_64
Duration:        0hrs 22min 13sec
---
t2/csa_c2c3.csv:     73.87680055661444  [Row 1, MEAN(area)]
t2/csa_pmj.csv:      73.89183952519573  [Row 1, MEAN(area)]
t2/csa_pam50.csv:    34.23530312082996  [Row 39, MEAN(area)]
t2s/csa_gm.csv:      12.515230379832953 [Row 4, MEAN(area)]
t2s/csa_wm.csv:      64.93314479093739  [Row 4, MEAN(area)]
mt/mtr_in_wm.csv:    54.417007086785446 [Row 1, MAP()]
dmri/fa_in_cst.csv:  0.7758118462499376 [Row 1, WA()]
dmri/fa_in_cst.csv:  0.773312472697186  [Row 2, WA()]
~~~