api.rst

API

nimare.dataset: Dataset IO

nimare.dataset

nimare

dataset.Dataset

nimare.meta: Meta-analytic algorithms

For more information about the components of coordinate-based meta-analysis in NiMARE, see cbma.

nimare.meta

nimare

meta.ibma meta.cbma.ale meta.cbma.mkda meta.cbma.base meta.kernel

nimare.results: Meta-analytic results

nimare.results

nimare

results.MetaResult

nimare.correct: Multiple comparisons correction

nimare.correct

nimare

correct.FWECorrector correct.FDRCorrector

nimare.diagnostics: Diagnostics

nimare.diagnostics

nimare

diagnostics.Jackknife

nimare.annotate: Automated annotation

nimare.annotate

nimare

annotate.cogat annotate.gclda annotate.lda annotate.text annotate.utils

nimare.decode: Functional characterization analysis

For more information about functional characterization analysis, see decoding.

nimare.decode

nimare

decode.discrete decode.continuous decode.encode

nimare.io: Tools for ingesting data in other formats

nimare.io

nimare

io.convert_neurosynth_to_dict io.convert_neurosynth_to_json io.convert_neurosynth_to_dataset io.convert_sleuth_to_dict io.convert_sleuth_to_json io.convert_sleuth_to_dataset io.convert_neurovault_to_dataset

nimare.transforms: Data transforms

nimare.transforms

nimare

transforms.ImageTransformer transforms.ImagesToCoordinates

template

function.rst

transforms.transform_images transforms.resolve_transforms transforms.sample_sizes_to_dof transforms.sample_sizes_to_sample_size transforms.sd_to_varcope transforms.se_to_varcope transforms.samplevar_dataset_to_varcope transforms.t_and_varcope_to_beta transforms.t_and_beta_to_varcope transforms.p_to_z transforms.t_to_z transforms.z_to_t transforms.z_to_p

nimare.extract: Dataset and model fetching

For more information about fetching data from the internet, see fetching tools.

nimare.extract

nimare

extract.fetch_neuroquery extract.fetch_neurosynth extract.download_nidm_pain extract.download_cognitive_atlas extract.download_abstracts extract.download_peaks2maps_model

extract.utils.get_data_dirs

nimare.stats: Statistical functions

nimare.stats

nimare

stats.one_way stats.two_way stats.pearson stats.null_to_p stats.nullhist_to_p stats.fdr

nimare.generate: Data generation functions

nimare.generate

nimare

generate.create_coordinate_dataset generate.create_neurovault_dataset

nimare.utils: Utility functions and submodules

nimare.utils

nimare

utils.get_template utils.get_masker utils.get_resource_path utils.vox2mm utils.mm2vox utils.tal2mni utils.mni2tal

nimare.workflows: Common workflows

nimare.workflows

nimare

workflows.ale_sleuth_workflow workflows.conperm_workflow workflows.macm_workflow workflows.peaks2maps_workflow workflows.scale_workflow

nimare.base: Base classes

nimare.base

nimare

base.NiMAREBase base.Estimator base.MetaEstimator base.Transformer base.Decoder