:mod:`nimare.dataset`: Dataset IO
.. automodule:: nimare.dataset :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst dataset.Dataset
:mod:`nimare.meta`: Meta-analytic algorithms
For more information about the components of coordinate-based meta-analysis in NiMARE, see :doc:`cbma`.
.. automodule:: nimare.meta :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: module.rst meta.ibma meta.cbma.ale meta.cbma.mkda meta.cbma.base meta.kernel
:mod:`nimare.results`: Meta-analytic results
.. automodule:: nimare.results :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst results.MetaResult
:mod:`nimare.correct`: Multiple comparisons correction
.. automodule:: nimare.correct :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst correct.FWECorrector correct.FDRCorrector
:mod:`nimare.diagnostics`: Diagnostics
.. automodule:: nimare.diagnostics :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst diagnostics.Jackknife diagnostics.FocusCounter
:mod:`nimare.annotate`: Automated annotation
.. automodule:: nimare.annotate :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: module.rst annotate.cogat annotate.gclda annotate.lda annotate.text annotate.utils
:mod:`nimare.decode`: Functional characterization analysis
For more information about functional characterization analysis, see :doc:`decoding`.
.. automodule:: nimare.decode :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: module.rst decode.discrete decode.continuous decode.encode
:mod:`nimare.io`: Tools for ingesting data in other formats
.. automodule:: nimare.io :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst io.convert_neurosynth_to_dict io.convert_neurosynth_to_json io.convert_neurosynth_to_dataset io.convert_sleuth_to_dict io.convert_sleuth_to_json io.convert_sleuth_to_dataset io.convert_neurovault_to_dataset
:mod:`nimare.transforms`: Data transforms
.. automodule:: nimare.transforms :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst transforms.ImageTransformer transforms.ImagesToCoordinates :template: function.rst transforms.transform_images transforms.resolve_transforms transforms.sample_sizes_to_dof transforms.sample_sizes_to_sample_size transforms.sd_to_varcope transforms.se_to_varcope transforms.samplevar_dataset_to_varcope transforms.t_and_varcope_to_beta transforms.t_and_beta_to_varcope transforms.p_to_z transforms.t_to_z transforms.z_to_t transforms.z_to_p
:mod:`nimare.extract`: Dataset and model fetching
For more information about fetching data from the internet, see :ref:`fetching tools`.
.. automodule:: nimare.extract :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst extract.fetch_neuroquery extract.fetch_neurosynth extract.download_nidm_pain extract.download_cognitive_atlas extract.download_abstracts extract.download_peaks2maps_model extract.utils.get_data_dirs
:mod:`nimare.stats`: Statistical functions
.. automodule:: nimare.stats :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst stats.one_way stats.two_way stats.pearson stats.null_to_p stats.nullhist_to_p stats.fdr
:mod:`nimare.generate`: Data generation functions
.. automodule:: nimare.generate :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst generate.create_coordinate_dataset generate.create_neurovault_dataset
:mod:`nimare.utils`: Utility functions and submodules
.. automodule:: nimare.utils :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst utils.get_template utils.get_masker utils.get_resource_path utils.vox2mm utils.mm2vox utils.tal2mni utils.mni2tal
:mod:`nimare.workflows`: Common workflows
.. automodule:: nimare.workflows :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: function.rst workflows.ale_sleuth_workflow workflows.conperm_workflow workflows.macm_workflow workflows.peaks2maps_workflow workflows.scale_workflow
:mod:`nimare.base`: Base classes
.. automodule:: nimare.base :no-members: :no-inherited-members:
.. currentmodule:: nimare
.. autosummary:: :toctree: generated/ :template: class.rst base.NiMAREBase base.Estimator base.MetaEstimator base.Transformer base.Decoder