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CA1Sim

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Name		Name	Last commit message	Last commit date
config		config
data		data
jobscripts		jobscripts
mech_config		mech_config
morphologies		morphologies
022315 NEURON install notes.txt		022315 NEURON install notes.txt
20220112_simulate_place_cell_subtr_inh_record_spines_DC_offset.py		20220112_simulate_place_cell_subtr_inh_record_spines_DC_offset.py
20230322 NEURON install notes.txt		20230322 NEURON install notes.txt
20231029_simulate_place_cell_record_syn_currents_DC_offset.py		20231029_simulate_place_cell_record_syn_currents_DC_offset.py
20231029_simulate_place_cell_record_syn_currents_DC_offset_no_nmda.py		20231029_simulate_place_cell_record_syn_currents_DC_offset_no_nmda.py
20231030_analyze_CA1Sim_dc_offset_syn_currents_trial_averaged.ipynb		20231030_analyze_CA1Sim_dc_offset_syn_currents_trial_averaged.ipynb
20260826_simulate_place_cell_DC_offset.py		20260826_simulate_place_cell_DC_offset.py
20260828_simulate_place_cell_record_summed_syn_currents_DC_offset.py		20260828_simulate_place_cell_record_summed_syn_currents_DC_offset.py
20260831_simulate_place_cell_record_summed_syn_currents_DC_offset_no_na.py		20260831_simulate_place_cell_record_summed_syn_currents_DC_offset_no_na.py
Aradi_Ca.mod		Aradi_Ca.mod
Aradi_Ca2.mod		Aradi_Ca2.mod
Aradi_CadepK.mod		Aradi_CadepK.mod
Aradi_CadepK2.mod		Aradi_CadepK2.mod
Ca_Accum.mod		Ca_Accum.mod
ampa_kin.mod		ampa_kin.mod
ampa_kin2.mod		ampa_kin2.mod
analyze_simple_axon_model.py		analyze_simple_axon_model.py
analyze_simple_axon_spike_adaptation.py		analyze_simple_axon_spike_adaptation.py
batch_modulate_poisson_r_inp.sh		batch_modulate_poisson_r_inp.sh
batch_parallel_optimize_GC_intrinsic_properties.sh		batch_parallel_optimize_GC_intrinsic_properties.sh
batch_parallel_optimize_GC_intrinsic_properties0.sh		batch_parallel_optimize_GC_intrinsic_properties0.sh
batch_parallel_optimize_GC_intrinsic_properties5.sh		batch_parallel_optimize_GC_intrinsic_properties5.sh
batch_parallel_optimize_GC_intrinsic_properties_scaling1.sh		batch_parallel_optimize_GC_intrinsic_properties_scaling1.sh
batch_parallel_optimize_GC_intrinsic_properties_scaling10.sh		batch_parallel_optimize_GC_intrinsic_properties_scaling10.sh
batch_parallel_optimize_GC_intrinsic_properties_scaling100.sh		batch_parallel_optimize_GC_intrinsic_properties_scaling100.sh
batch_parallel_optimize_GC_synaptic_integration.sh		batch_parallel_optimize_GC_synaptic_integration.sh
batch_place_cell_add_noise.sh		batch_place_cell_add_noise.sh
batch_place_cell_biased_weights.sh		batch_place_cell_biased_weights.sh
batch_place_cell_biased_weights2.sh		batch_place_cell_biased_weights2.sh
batch_place_cell_compressed_phase.sh		batch_place_cell_compressed_phase.sh
batch_place_cell_delta_freq.sh		batch_place_cell_delta_freq.sh
batch_place_cell_dyn_inh_phase.sh		batch_place_cell_dyn_inh_phase.sh
batch_place_cell_no_nmda.sh		batch_place_cell_no_nmda.sh
batch_place_cell_r_inp.sh		batch_place_cell_r_inp.sh
batch_place_cell_record_i_syn.sh		batch_place_cell_record_i_syn.sh
batch_place_cell_single_compartment.sh		batch_place_cell_single_compartment.sh
batch_place_cell_subtr_inh.sh		batch_place_cell_subtr_inh.sh
batch_place_cell_subtr_inh_shifted.sh		batch_place_cell_subtr_inh_shifted.sh
batch_place_cell_test_sequences.sh		batch_place_cell_test_sequences.sh
batch_place_cell_wrap_around.sh		batch_place_cell_wrap_around.sh
batch_poisson_inputs.sh		batch_poisson_inputs.sh
batch_process_i_syn_files.sh		batch_process_i_syn_files.sh
batch_rinp.sh		batch_rinp.sh
batch_spine_attenuation_ratio.sh		batch_spine_attenuation_ratio.sh
batch_test_ipyparallel.sh		batch_test_ipyparallel.sh
batch_test_ipyparallel_bw_fixed.sh		batch_test_ipyparallel_bw_fixed.sh
batch_test_ipyparallel_bw_setup.sh		batch_test_ipyparallel_bw_setup.sh
build_expected_EPSP_reference.sh		build_expected_EPSP_reference.sh
compare_mech_dicts.py		compare_mech_dicts.py
compare_mech_files.py		compare_mech_files.py
compare_syn.py		compare_syn.py
consolidate_i_syn_files.py		consolidate_i_syn_files.py
consolidate_tracked_spine_data.py		consolidate_tracked_spine_data.py
estimate_CA3_weights_from_CA1_vm.py		estimate_CA3_weights_from_CA1_vm.py
example_specify_mech_dict.py		example_specify_mech_dict.py
example_specify_mech_dict_h.py		example_specify_mech_dict_h.py
exp2EPSC.mod		exp2EPSC.mod
exp2EPSG.mod		exp2EPSG.mod
exp2EPSG_NMDA.mod		exp2EPSG_NMDA.mod
fit_parameter_distribution_GC.py		fit_parameter_distribution_GC.py
fit_parameter_exponential_distribution.py		fit_parameter_exponential_distribution.py
function_lib.py		function_lib.py
gaba_a_kin.mod		gaba_a_kin.mod
generate_grid_data.py		generate_grid_data.py
h.mod		h.mod
hh3k.mod		hh3k.mod
hh3na.mod		hh3na.mod
hh3nax.mod		hh3nax.mod
inspect_grid_data.py		inspect_grid_data.py
kad.mod		kad.mod
kap.mod		kap.mod
kdr.mod		kdr.mod
km2.mod		km2.mod
km3.mod		km3.mod
km_orig.mod		km_orig.mod
load_multiple_field_matlab_data.py		load_multiple_field_matlab_data.py
measure_GABA_IPSC.py		measure_GABA_IPSC.py
modify_grid_data.py		modify_grid_data.py
morph.py		morph.py
nas.mod		nas.mod
nax.mod		nax.mod
nmda_kin.mod		nmda_kin.mod
nmda_kin2.mod		nmda_kin2.mod
nmda_kin3.mod		nmda_kin3.mod
nmda_kin4.mod		nmda_kin4.mod
nmda_kin5.mod		nmda_kin5.mod
optimize_AMPA_KIN.py		optimize_AMPA_KIN.py
optimize_AMPA_KIN2.py		optimize_AMPA_KIN2.py
optimize_GABA_A_KIN.py		optimize_GABA_A_KIN.py
optimize_NMDA_KIN.py		optimize_NMDA_KIN.py
optimize_NMDA_KIN2.py		optimize_NMDA_KIN2.py
optimize_dendritic_excitability_102715.py		optimize_dendritic_excitability_102715.py
optimize_holding_current.py		optimize_holding_current.py
optimize_ih_exp_scale.py		optimize_ih_exp_scale.py
optimize_nmda_ampa_ratio.py		optimize_nmda_ampa_ratio.py

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