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ARC Commander QuickStart (Experts) |
2023-01-27 |
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In this guide we focus on how to use the ARC Commander to create your ARC and structure, store and share your data.
UserAdvanced ModeTutorial☑️ You know how to use a command line
☑️ You have created an ARC before
☑️ The latest version of the ARC Commander is installed on your computer
☑️ You have a DataPLANT account
☑️ Your computer is linked to the DataHUB via personal access token
🚀 Voila! You are ready to follow these few steps to create a minimal ARC sharable via DataPLANT's DataHUB.
# Create and navigate to your ARC folder
mkdir <path/to/YourARCFolder>
cd <path/to/YourARCFolder>
# Setup the ARC structure with one study and one assay
arc init -i <YourInvestigationID>
arc assay add -s <YourStudyID> -a <YourAssayID>
arc sync -f -r https://git.nfdi4plants.org/<YourUserName>/<YourARC> -m "initialize ARC structure"
💡 Make sure that no ARC exists at
https://git.nfdi4plants.org/<YourUserName>/<YourARC>
. Otherwise you will sync to that ARC.
💡 The last command will prompt an Error
ERROR: GIT: fatal: repository 'https://git.nfdi4plants.org/<YourUserName>/<YourARC>' not found
(Windows) orERROR: GIT: fatal: couldn't find remote ref main
(macOS). Don't worry, the ARC is being created at that DataHUB during this step.