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Update .travis.yml
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nickcafferry committed Sep 18, 2020
1 parent 93c5575 commit 7967feb
Showing 1 changed file with 33 additions and 32 deletions.
65 changes: 33 additions & 32 deletions .travis.yml
Original file line number Diff line number Diff line change
Expand Up @@ -26,37 +26,38 @@ install:
python3 setup.py install
script:
- git config --global user.email "wei.mei.18@alumni.ucl.ac.uk"
- git config --global user.name "nickcafferry"
- git init
- git lfs install
- echo -e "machine github.com\n login $GITHUB_TOKEN" > ~/.netrc
- git lfs pull
- ls
- coverage debug sys
- coverage run pymbd/vdw_param.py
- codecov
- bash <(curl -s https://codecov.io/bash)
- cd /home/travis/build/nickcafferry/Machine-Learning-in-Molecular-Sciences/Machine-Learning-for-Structural-Bioinformatics/PSSpred/
- mkdir nr
- cd nr/
- wget -O nr.tar.gz https://zhanglab.ccmb.med.umich.edu/cgi-bin/download_ftp.cgi?ID=nr.tar.gz
- tar -zxvf nr.tar.gz
- ls
- cd ../
- sudo apt-get install perl
- cd PSSpred_v4/
- ./PSSpred.pl seq.fasta
- ls
- git lfs track "*.dat"
- git add .gitattributes
- git commit -m "track *.psd files using Git LFS"
- git add seq.dat
- git commit -m "Add seq.dat"
- git add seq.dat.ss
- git commit -m "Add seq.dat.ss"
- pwd
- cd ../../../
- git push origin master
github-token: $GITHUB_TOKEN
- git config --global user.email "wei.mei.18@alumni.ucl.ac.uk"
- git config --global user.name "nickcafferry"
- git init
- git lfs install
- echo -e "machine github.com\n login $GITHUB_TOKEN" > ~/.netrc
- git lfs pull
- ls
- coverage debug sys
- coverage run pymbd/vdw_param.py
- codecov
- bash <(curl -s https://codecov.io/bash)
- cd /home/travis/build/nickcafferry/Machine-Learning-in-Molecular-Sciences/Machine-Learning-for-Structural-Bioinformatics/PSSpred/
- mkdir nr
- cd nr/
- wget -O nr.tar.gz https://zhanglab.ccmb.med.umich.edu/cgi-bin/download_ftp.cgi?ID=nr.tar.gz
- tar -zxvf nr.tar.gz
- ls
- cd ../
- sudo apt-get install perl
- cd PSSpred_v4/
- ./PSSpred.pl seq.fasta
- ls
- git lfs track "*.dat"
- git add .gitattributes
- git commit -m "track *.psd files using Git LFS"
- git add seq.dat
- git commit -m "Add seq.dat"
- git add seq.dat.ss
- git commit -m "Add seq.dat.ss"
- pwd
- cd ../../../
- git push origin master
notifications:
email: false

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