Update .travis.yml

.travis.yml

@@ -1,62 +1,43 @@
 language: python
-
 sudo: required
-dist: trusty
-
-group: edge
-
-deploy:
-  provider: pages
-  # local_dir: ${TRAVIS_BUILD_DIR}/docs/build/html
-  local_dir: /docs/build/html
-  skip_cleanup: true
-  repo: qmlcode/qmlcode.github.io
-  target_branch: master
-  github_token: ${GH_TOKEN} # Set in travis-ci.org dashboard
-  on:
-    branch: master
-    condition: ${TRAVIS_PYTHON_VERSION} = "2.7"
 
 python:
-  - "2.7"
-  - "3.5"
   - "3.6"
-
+  - "3.7"
+  - "3.8"
+
 before_install:
+  - cd Machine-Learning-for-Structural-Bioinformatics/PSSpred/
+  - mkdir nr
+  - cd nr/
+  - wget -O nr.tar.gz https://zhanglab.ccmb.med.umich.edu/cgi-bin/download_ftp.cgi?ID=nr.tar.gz
+  - tar -zxvf nr.tar.gz
+  - ls
+  - pwd
   - sudo apt-get update -qq
-
+  - wget https://zhanglab.ccmb.med.umich.edu/PSSpred/PSSpred_v4.tar.bz2
+  - tar -jxvf PSSpred_v4.tar.bz2
+  - ls
+  - pwd
+
+before_install:
+  - pip3 install gfortran
+  - pip3 install coverage
+  - pip3 install codecov
+  - pip3 install -U tox-travis
 install:
- - sudo apt-get install -qq gcc gfortran libblas-dev liblapack-dev
- - sudo apt-get install -qq gcc-4.8 gfortran-4.8
- - |
-   if [ ${TRAVIS_PYTHON_VERSION:0:1} = 3 ]; then
-       sudo apt-get install python3-numpy
-       pip3 install scipy
-       python3 setup.py build
-       python3 setup.py install
-       pip3 install sphinx
-       pip3 install sphinx-rtd-theme
-       cd ${TRAVIS_BUILD_DIR}/docs
-       make html
-   elif [ ${TRAVIS_PYTHON_VERSION} = "2.7" ]; then
-       sudo apt-get install python-numpy
-       pip2 install scipy
-       python2 setup.py build
-       python2 setup.py install
-       pip2 install sphinx
-       pip2 install sphinx-rtd-theme
-       cd ${TRAVIS_BUILD_DIR}/docs
-       make html
-   else
-       echo "ERROR: Unknown Python version."
-   fi
-
-
-before_script:
- - cd ${TRAVIS_BUILD_DIR}/tests/
-
+  - |
+    python3 setup.py build
+    python3 setup.py sdist
+    python3 setup.py bdist
+    python3 setup.py bdist_egg
+    python3 setup.py install
+    
 script:
- - nosetests -v
-
+ - ls
+ - coverage debug sys
+ - coverage run pymbd/pymbd.py
+ - codecov
+ - bash <(curl -s https://codecov.io/bash)
 notifications:
   email: false