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<li class="toctree-l1"><a class="reference internal" href="quickstart.html">Quickstart</a></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="auto_examples/index.html">Examples</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l3"><a class="reference internal" href="auto_examples/00_tutorials/plot_python_101.html">Basic numerics and plotting with Python</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/00_tutorials/plot_nilearn_101.html">Basic nilearn example: manipulating and looking at data</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/00_tutorials/plot_3d_and_4d_niimg.html">3D and 4D niimgs: handling and visualizing</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/00_tutorials/plot_decoding_tutorial.html">A introduction tutorial to fMRI decoding</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/00_tutorials/plot_single_subject_single_run.html">Intro to GLM Analysis: a single-session, single-subject fMRI dataset</a></li>
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<li class="toctree-l2 has-children"><a class="reference internal" href="auto_examples/01_plotting/index.html">Visualization of brain images</a><input class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" role="switch" type="checkbox"/><label for="toctree-checkbox-3"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_demo_glass_brain.html">Glass brain plotting in nilearn</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_visualize_megatrawls_netmats.html">Visualizing Megatrawls Network Matrices from Human Connectome Project</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_atlas.html">Basic Atlas plotting</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_multiscale_parcellations.html">Visualizing multiscale functional brain parcellations</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_colormaps.html">Matplotlib colormaps in Nilearn</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_overlay.html">Visualizing a probabilistic atlas: the default mode in the MSDL atlas</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_overlay.html#visualizing-a-probabilistic-atlas-with-plot-prob-atlas">Visualizing a probabilistic atlas with plot_prob_atlas</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_dim_plotting.html">Controlling the contrast of the background when plotting</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_visualization.html">NeuroImaging volumes visualization</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_carpet.html">Visualizing global patterns with a carpet plot</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_haxby_masks.html">Plot Haxby masks</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_surface_projection_strategies.html">Technical point: Illustration of the volume to surface sampling schemes</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_demo_plotting.html">Plotting tools in nilearn</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_prob_atlas.html">Visualizing 4D probabilistic atlas maps</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_surf_stat_map.html">Seed-based connectivity on the surface</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_surf_atlas.html">Loading and plotting of a cortical surface atlas</a></li>
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<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_demo_glass_brain_extensive.html">Glass brain plotting in nilearn (all options)</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/01_plotting/plot_demo_more_plotting.html">More plotting tools from nilearn</a></li>
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<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_stimuli.html">Show stimuli of Haxby et al. dataset</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_mixed_gambles_frem.html">FREM on Jimura et al “mixed gambles” dataset.</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_frem.html">Decoding with FREM: face vs house object recognition</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_oasis_vbm_space_net.html">Voxel-Based Morphometry on Oasis dataset with Space-Net prior</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_anova_svm.html">Decoding with ANOVA + SVM: face vs house in the Haxby dataset</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_searchlight_surface.html">Cortical surface-based searchlight decoding</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_multiclass.html">The haxby dataset: different multi-class strategies</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_searchlight.html">Searchlight analysis of face vs house recognition</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_glm_decoding.html">Decoding of a dataset after GLM fit for signal extraction</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_grid_search.html">Setting a parameter by cross-validation</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_full_analysis.html">ROI-based decoding analysis in Haxby et al. dataset</a></li>
<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_haxby_different_estimators.html">Different classifiers in decoding the Haxby dataset</a></li>
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<li class="toctree-l3"><a class="reference internal" href="auto_examples/02_decoding/plot_miyawaki_encoding.html">Encoding models for visual stimuli from Miyawaki et al. 2008</a></li>
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<li class="toctree-l2 has-children"><a class="reference internal" href="auto_examples/03_connectivity/index.html">Functional connectivity</a><input class="toctree-checkbox" id="toctree-checkbox-5" name="toctree-checkbox-5" role="switch" type="checkbox"/><label for="toctree-checkbox-5"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2"><a class="reference internal" href="introduction.html">Introduction</a></li>
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<li class="toctree-l3"><a class="reference internal" href="building_blocks/manual_pipeline.html">Building your own neuroimaging machine-learning pipeline</a></li>
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<li class="toctree-l2 has-children"><a class="reference internal" href="modules/connectome.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">nilearn.connectome</span></code>: Functional Connectivity</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2 has-children"><a class="reference internal" href="modules/mass_univariate.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">nilearn.mass_univariate</span></code>: Mass-Univariate Analysis</a><input class="toctree-checkbox" id="toctree-checkbox-27" name="toctree-checkbox-27" role="switch" type="checkbox"/><label for="toctree-checkbox-27"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2 has-children"><a class="reference internal" href="modules/plotting.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">nilearn.plotting</span></code>: Plotting Brain Data</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2 has-children"><a class="reference internal" href="modules/regions.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">nilearn.regions</span></code>: Operating on Regions</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle child pages in navigation</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<section class="domainindex-section">
<h1>Python Module Index</h1>
<div class="domainindex-jumpbox"><a href="#cap-n"><strong>n</strong></a></div>
</section>
<table class="domainindex-table">
<tr class="pcap">
<td></td><td> </td><td></td>
</tr>
<tr class="cap" id="cap-n">
<td></td><td><strong>n</strong></td><td></td>
</tr>
<tr>
<td><img src="_static/minus.png" class="toggler"
id="toggle-1" style="display: none" alt="-" /></td>
<td>
<code class="xref">nilearn</code></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/connectome.html#module-nilearn.connectome"><code class="xref">nilearn.connectome</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/datasets.html#module-nilearn.datasets"><code class="xref">nilearn.datasets</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/decoding.html#module-nilearn.decoding"><code class="xref">nilearn.decoding</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/decomposition.html#module-nilearn.decomposition"><code class="xref">nilearn.decomposition</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/glm.html#module-nilearn.glm"><code class="xref">nilearn.glm</code></a></td><td>
<em></em></td>
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<td></td>
<td>   
<a href="modules/glm.html#module-nilearn.glm.first_level"><code class="xref">nilearn.glm.first_level</code></a></td><td>
<em></em></td>
</tr>
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<td></td>
<td>   
<a href="modules/glm.html#module-nilearn.glm.second_level"><code class="xref">nilearn.glm.second_level</code></a></td><td>
<em></em></td>
</tr>
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<td></td>
<td>   
<a href="modules/image.html#module-nilearn.image"><code class="xref">nilearn.image</code></a></td><td>
<em></em></td>
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<tr class="cg-1">
<td></td>
<td>   
<a href="modules/interfaces.html#module-nilearn.interfaces"><code class="xref">nilearn.interfaces</code></a></td><td>
<em></em></td>
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<tr class="cg-1">
<td></td>
<td>   
<a href="modules/interfaces.html#module-nilearn.interfaces.bids"><code class="xref">nilearn.interfaces.bids</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/interfaces.html#module-nilearn.interfaces.fmriprep"><code class="xref">nilearn.interfaces.fmriprep</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/interfaces.html#module-nilearn.interfaces.fsl"><code class="xref">nilearn.interfaces.fsl</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/maskers.html#module-nilearn.maskers"><code class="xref">nilearn.maskers</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/masking.html#module-nilearn.masking"><code class="xref">nilearn.masking</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/mass_univariate.html#module-nilearn.mass_univariate"><code class="xref">nilearn.mass_univariate</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/plotting.html#module-nilearn.plotting"><code class="xref">nilearn.plotting</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/plotting.html#module-nilearn.plotting.displays"><code class="xref">nilearn.plotting.displays</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
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<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/reporting.html#module-nilearn.reporting"><code class="xref">nilearn.reporting</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
<td></td>
<td>   
<a href="modules/signal.html#module-nilearn.signal"><code class="xref">nilearn.signal</code></a></td><td>
<em></em></td>
</tr>
<tr class="cg-1">
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<td>   
<a href="modules/surface.html#module-nilearn.surface"><code class="xref">nilearn.surface</code></a></td><td>
<em></em></td>
</tr>
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