/
bed_test.go
47 lines (42 loc) · 929 Bytes
/
bed_test.go
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
package bed2x
import "testing"
var (
bed1 = &Bed12{"chr1", 0, 100, "noname", float64(0.0), "-", 50, 90, "0,0,0", 3, []int{10, 10, 10}, []int{0, 50, 90}}
bed2 = &Bed12{"chr1", 0, 100, "noname", float64(0.0), "-", 5, 95, "0,0,0", 3, []int{10, 10, 10}, []int{0, 50, 90}}
)
func TestUtr(t *testing.T) {
t.Log(bed1)
t.Log(bed1.CDS())
t.Log(bed1.UTR3())
t.Log(bed1.UTR5())
e, _ := bed1.Exons()
for _, v := range e {
t.Log(v)
}
introns, _ := bed1.Introns()
for _, v := range introns {
t.Log(v)
}
t.Log(bed2)
t.Log(bed2.CDS())
t.Log(bed2.UTR3())
t.Log(bed2.UTR5())
t.Log(Upstream(bed2, 1000))
}
func TestDb(t *testing.T) {
db := NewDb()
db.Load("test.bed")
iter, _ := db.Query("chr1", 1, 20001)
for v := range iter {
t.Log(v)
}
}
func TestDb2(t *testing.T) {
db := NewDb()
db.Load("chr1:1-30000")
db.Load("chr1:200-30000")
iter, _ := db.Query("chr1", 1, 20001)
for v := range iter {
t.Log(v)
}
}