/
bed.go
60 lines (53 loc) · 927 Bytes
/
bed.go
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package data
import (
"strconv"
"strings"
)
type Bed3 interface {
Chr() string
Start() int
End() int
}
type Bed4 struct {
chr string
start int
end int
name string
}
func (b Bed4) Chr() string {
return b.chr
}
func (b Bed4) Start() int {
return b.start
}
func (b Bed4) End() int {
return b.end
}
func (b Bed4) Id() string {
return b.name
}
type ShortBed interface {
Chr() string
Start() int
End() int
}
func regionText(b ShortBed) string {
s := strconv.Itoa(b.Start())
e := strconv.Itoa(b.End())
return b.Chr() + ":" + s + "-" + e
}
//TODO
func regionsText(bs []Bed4) string { //TODO interface array function
r := make([]string, len(bs))
for i, v := range bs {
r[i] = regionText(v)
}
return strings.Join(r, ",")
}
func bedsText(bs []Bed3) string { //TODO interface array function
r := make([]string, len(bs))
for i, v := range bs {
r[i] = regionText(v)
}
return strings.Join(r, ",")
}