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Hmm. It's not obvious what the problem is, here. Is this a clean working directory (passed with -w), or, if not, does it still occur if you use a clean working directory?
So I cannot for the life of me figure out how you're getting to the point where you're trying to pickle that particular object; I'm unable to write a test for my fix. Are you able to reproduce this problem on a local system where you can use fmriprep-docker? If so, then we should be able to test my fix without just releasing and seeing if it resolves your problem.
Hi!
We've been running large MB-datasets successfully using fmriprep 1.1.8 and the the "--use-plugin" argument (yaml file configured as in #1259).
However, when testing out version 1.2.1 we get the following error (on the same data with the same input parameters as in 1.1.8):
The error occurs immediately after the citation dump (i.e., before initiation of any workflows)
Here's the command:
And the content of the yaml-file:
We do not see the error when running fmriprep without the --use-plugin argument (however other issues arises, see #1365).
Any ideas?
Thanks!
Markus
(sorry about the screenshots - our data is stored in a secure environment that won't even let us copy-paste text)
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