One individual report per input functional timeseries will be generated in the path <output_dir>/reports/sub-IDxxx_task-name_bold.html. An example report is given `here <http://web.stanford.edu/group/poldracklab/mriqc/reports/sub-50013_task-rest_bold.html>_.
The individual report for the functional images is structured as follows:
The first section summarizes some important information:
- subject identifier, date and time of execution of
mriqc, software version;- workflow details and flags raised during execution; and
- the extracted IQMs.
The section with visual reports contains:
Mosaic view of the average BOLD signal.
Mosaic view of the temporal standard deviation.
Summary plot, showing the slice-wise signal intensity at the extremes for the identification of spikes, the outliers metric, the DVARS and the
FD (framewise displacement). Finally the so-called carpetplot [Power2016]
If mriqc was run with the --verbose-reports flag, the following plots will be appended:
Mosaic view of the average BOLD signal, zoomed-in to the bounding box of brain activation.
Mosaic view of the average BOLD signal, with background enhancement.
One rows of axial views at different Z-axis points showing the calculated brain mask.
Mosaic view with animation for assessment of the co-registration to MNI space (roll over the image to activate the animation).
If some metadata was found in the BIDS structure, it is reported here.
References