messages.py

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# vi: set ft=python sts=4 ts=4 sw=4 et:
#
# Copyright 2021 The NiPreps Developers <nipreps@gmail.com>
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#
#     http://www.apache.org/licenses/LICENSE-2.0
#
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"""Logging and console messages."""

BIDS_META = 'Generating BIDS derivatives metadata.'
BUILDING_WORKFLOW = 'Building {modality} MRIQC workflow {detail}.'
CREATED_DATASET = (
    'Created dataset X="{feat_file}", Y="{label_file}" (N={n_samples} valid samples)'
)
DROPPING_NON_NUMERICAL = 'Dropping {n_labels} samples for having non-numerical labels'
GROUP_FINISHED = 'Group level finished successfully.'
GROUP_NO_DATA = 'No data found. No group level reports were generated.'
GROUP_START = 'Group level started...'
INDIVIDUAL_REPORT_GENERATED = 'Generated individual log: {out_file}'
PARTICIPANT_START = """\
------------------------------------------------------------------
  Running MRIQC version {version}
  ----------------------------------------------------------------
  * BIDS dataset path: {bids_dir}.
  * Output folder: {output_dir}.
  * Analysis levels: {analysis_level}.
{extra_messages}------------------------------------------------------------------
"""
PARTICIPANT_FINISHED = """\
----------------------------------------------------------------
  Participant level finished successfully ({duration})
----------------------------------------------------------------
"""
POST_Z_NANS = 'Columns {nan_columns} contain NaNs after z-scoring.'
QC_UPLOAD_COMPLETE = 'QC metrics successfully uploaded.'
QC_UPLOAD_START = 'MRIQC Web API: submitting to <{url}>'
GROUP_REPORT_GENERATED = 'Group-{modality} report generated: {path}'
RUN_FINISHED = 'MRIQC completed.'
SUSPICIOUS_DATA_TYPE = "Input image {in_file} has a suspicious data type: '{dtype}'"
TSV_GENERATED = 'Generated summary TSV table for {modality} data: {path}'
VOXEL_SIZE_OK = 'Voxel size is large enough.'
VOXEL_SIZE_SMALL = (
    'One or more voxel dimensions (%f, %f, %f) are smaller than the '
    'requested voxel size (%f) - diff=(%f, %f, %f)'
)
Z_SCORING = 'z-scoring dataset...'