Argument order matters to nibabies-wrapper

[chaselgrove]

What happened?

The order of arguments to nibabies-wrapper matters when using -i. The command (given separately) fails with:

The selected working directory is a subdirectory of the input BIDS folder. Please modify the output path.

If -i and -w are given after the positional arguments, this doesn't happen.

What command did you use?

nibabies-wrapper singularity \
    -i nibabies-23.1.0.sif \
    -w `pwd`/tmp \
    `pwd`/bcp \
    `pwd`/output \
    participant

What version of NiBabies are you using?

23.1.0

Relevant log output

No response

Add any additional information or context about the problem here.

nibabies-23.1.0.sif must exist, but it doesn't matter if bcp, output, or tmp exist.