We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Am only getting MNI space func ouputs, not cifti. I would expect both to be output such as in fmriprep. (I do get anat cifti outputs).
When changing input for --cifti-output flag it will only change anat outputs but not func ?
Shouldn't default be to output both mni and cifti space func outputs ?
sub-nibabies-23.1.0 -i /MRI_DATA/mritesting/marscombo/rawdata/ -o /MRI_DATA/mritesting/marscombo/derivatives/nibabies -d /MRI_DATA/mritesting/marscombo/derivatives/nibabies/work -l /MRI_DATA/mritesting/marscombo/derivatives/nibabies/sub-marscombo305402.log -a "--participant-label sub-marscombo305402 --cifti-output 91k --project-goodvoxels --age-months 4 --skip_bids_validation"
23.1.0
[environment] cpu_count = 24 exec_env = "docker" free_mem = 114.2 overcommit_policy = "heuristic" overcommit_limit = "50%" nipype_version = "1.8.6" templateflow_version = "23.1.0" version = "23.1.0" [execution] bids_dir = "/data" bids_database_dir = "/work/20240116-172609_4e842562-eddb-41d4-b02d-ce3c92b04fff/bids_db" bids_description_hash = "6ef18c859337aa2808b2b7a6da1c25dea0724d5fcbbf2a2b56a23b07ae39f803" boilerplate_only = false sloppy = false debug = [] fs_license_file = "/opt/freesurfer/license.txt" fs_subjects_dir = "/out/sourcedata/freesurfer" layout = "BIDS Layout: .../data | Subjects: 3 | Sessions: 3 | Runs: 6" log_dir = "/out/logs" log_level = 10 low_mem = false md_only_boilerplate = false nibabies_dir = "/out" notrack = false output_dir = "/out" me_output_echos = false output_layout = "bids" reports_only = false run_uuid = "20240116-172609_4e842562-eddb-41d4-b02d-ce3c92b04fff" participant_label = [ "marscombo305402",] templateflow_home = "/home/nibabies/.cache/templateflow" unique_labels = [ [ "marscombo305402", "20686",],] work_dir = "/work" write_graph = false [workflow] age_months = 4 analysis_level = "participant" anat_only = false aroma_err_on_warn = false aroma_melodic_dim = -200 bold2t1w_dof = 6 bold2t1w_init = "register" cifti_output = "91k" fd_radius = 45 fmap_bspline = false force_syn = false hires = true ignore = [] longitudinal = false medial_surface_nan = false project_goodvoxels = true regressors_all_comps = false regressors_dvars_th = 1.5 regressors_fd_th = 0.5 run_reconall = true skull_strip_fixed_seed = false skull_strip_template = "UNCInfant:cohort-1" skull_strip_t1w = "force" slice_time_ref = 0.5 surface_recon_method = "infantfs" use_aroma = false use_bbr = false use_syn_sdc = false [nipype] crashfile_format = "txt" get_linked_libs = false nprocs = 24 omp_nthreads = 1 plugin = "MultiProc" resource_monitor = false stop_on_first_crash = false [seeds] master = 38198 ants = 3473 numpy = 48639 [nipype.plugin_args] maxtasksperchild = 1 raise_insufficient = false
No response
The text was updated successfully, but these errors were encountered:
Do you see any error messages in the log? And you may have better luck with the latest development release
Sorry, something went wrong.
Just tried with Version 24.0.0a1 and same thing - no errors/crash in log
No branches or pull requests
What happened?
Am only getting MNI space func ouputs, not cifti. I would expect both to be output such as in fmriprep. (I do get anat cifti outputs).
When changing input for --cifti-output flag it will only change anat outputs but not func ?
Shouldn't default be to output both mni and cifti space func outputs ?
What command did you use?
sub-nibabies-23.1.0 -i /MRI_DATA/mritesting/marscombo/rawdata/ -o /MRI_DATA/mritesting/marscombo/derivatives/nibabies -d /MRI_DATA/mritesting/marscombo/derivatives/nibabies/work -l /MRI_DATA/mritesting/marscombo/derivatives/nibabies/sub-marscombo305402.log -a "--participant-label sub-marscombo305402 --cifti-output 91k --project-goodvoxels --age-months 4 --skip_bids_validation"
What version of NiBabies are you using?
23.1.0
Relevant log output
Add any additional information or context about the problem here.
No response
The text was updated successfully, but these errors were encountered: