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(WIP) DKI PR5 - NF: DKI-ODF estimation #685

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(WIP) DKI PR5 - NF: DKI-ODF estimation #685

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433269b
NF, DOC: Start implementing the DKI-ODF estimate. Adding dki_odf func…
RafaelNH Jul 16, 2015
a41fdd9
DOC: Adding documentation of function kodf
RafaelNH Jul 16, 2015
b37793d
NF (WIP): start write the code for diffusion_kurtosis_odf
RafaelNH Jul 16, 2015
03b4bdb
NF: First version of the DKI-ODF implemented, now it have to be teste…
RafaelNH Jul 17, 2015
32e9f6d
DOC, BF: Create an example of usage from the reconstruction of the DK…
RafaelNH Jul 20, 2015
1563466
RF, DOC, TESTS: change name of variable alfa to alpha. Writing test f…
RafaelNH Jul 23, 2015
705999a
The test for evaluating the dki-odf estimate depends on function dki.…
RafaelNH Jul 24, 2015
d8da166
TEST: DKI-ODF estimations from dki functions and from dki class objec…
RafaelNH Jul 24, 2015
fe8d8ae
RF, TESTS: Remove some unnecessary input dt on functions _dki_odf_cor…
RafaelNH Jul 24, 2015
0dc3949
DOC: Uppps I forgot to remove input in documentation of function _dki…
RafaelNH Jul 24, 2015
bc345bf
DOC: Add a first draft of the example for DKI tractography usage (WIP)
RafaelNH Jul 29, 2015
aca3f87
NF: Start defining a function to extract fiber directions from the DK…
RafaelNH Jul 29, 2015
21aa49d
NF: First version of the function to estimate fiber directions from d…
RafaelNH Jul 31, 2015
4f34e64
RF: Remove helper function _direction_kurtosis_odf. Now all calculati…
RafaelNH Jul 31, 2015
be70820
BF: Solving incompatibility to numpy==1.6.0
RafaelNH Aug 1, 2015
d6079b5
TEST: Remove number of directions to test DKI-ODF (increase test speed)
RafaelNH Aug 1, 2015
e647966
NF: dki direction estimation goes beyond the precision of the directi…
RafaelNH Aug 1, 2015
457bde5
NF: Add dki fiber direction estimate in DKI class object and test it …
RafaelNH Aug 3, 2015
c7f201d
RF: remove small and close together peaks after convergence in dki fi…
RafaelNH Aug 3, 2015
733d27a
RF: add a close together peak removal procedure before convergence ju…
RafaelNH Aug 3, 2015
13a01ef
DOC: Working on the DKI tractography sample example according to the …
RafaelNH Aug 10, 2015
c423656
DOC: Reconstruction and visualization of the DKI-ODF from simulations…
RafaelNH Aug 11, 2015
2b51ba7
DOC: Start adding the real brain data part of the example and do some…
RafaelNH Aug 13, 2015
8628f9a
DOC: First plot of the DKI-ODF in real data was added in the example
RafaelNH Aug 14, 2015
c91c34c
DOC, RF: Refactoring example of usage, load denoised real dataset if …
RafaelNH Aug 20, 2015
0afffca
DOC: Visualization of the fiber estimates obtain from real brain DKI-…
RafaelNH Aug 21, 2015
19cae24
DOC: Add steps to process all brain DKI based tractography in the exa…
RafaelNH Aug 23, 2015
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