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cannot execute binary file: Exec format error #162

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greedyscript opened this issue Oct 9, 2018 · 2 comments
Closed

cannot execute binary file: Exec format error #162

greedyscript opened this issue Oct 9, 2018 · 2 comments

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@greedyscript
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Hello, I am encountering a simple error in the dockerized version of mindboggle. This is the first time I have this error, and pulled the docker version yesterday. Have you guys had this error before? Using the example image:

HOST=/data
DOCK=/home/jovyan/work
IMAGE=$DOCK/Mri_Data/T1.nii.gz
ID=T1w
docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle $IMAGE --id $ID
INFO: /root/matlab/startup.m does not exist ... creating
/neurodocker/startup.sh: line 5: /home/jovyan/work/Mri_Data/T1.nii.gz: cannot execute binary file: Exec format error

Thanks!
Carlos

@satra
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satra commented Oct 9, 2018

@cgutierrez19 - the command now expects mindboggle123 as such:

docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle mindboggle123 $IMAGE --id $ID

let us know if that works.

@greedyscript
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Thank you Satra, it's working now.

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