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environment.yml
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environment.yml
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name: Evolink
channels:
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- aom=3.3.0=h27087fc_1
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py38h0a891b7_2
- asttokens=2.0.5=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attrs=21.4.0=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- backports.zoneinfo=0.2.1=py38h0a891b7_5
- beautifulsoup4=4.11.1=pyha770c72_0
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_10
- biom-format=2.1.12=py38h71d37f0_1
- bleach=5.0.1=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_7
- brotli-bin=1.0.9=h166bdaf_7
- brotlipy=0.7.0=py38h0a891b7_1004
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.6.15=ha878542_0
- cachecontrol=0.12.11=pyhd8ed1ab_0
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2022.6.15=pyhd8ed1ab_1
- cffi=1.14.6=py38ha65f79e_0
- charset-normalizer=2.1.0=pyhd8ed1ab_0
- click=8.1.3=py38h578d9bd_0
- cryptography=37.0.2=py38h2b5fc30_0
- curl=7.83.1=h7bff187_0
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.30=py38hfa26641_0
- debugpy=1.6.0=py38hfa26641_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=0.8.3=pyhd8ed1ab_0
- expat=2.4.8=h27087fc_0
- ffmpeg=5.0.1=h594f047_0
- fftw=3.3.10=nompi_h77c792f_102
- flit-core=3.7.1=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.33.3=py38h0a891b7_0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py38h578d9bd_5
- gcc_impl_linux-64=9.4.0=h03d3576_16
- gcc_linux-64=9.4.0=h391b98a_10
- gdk-pixbuf=2.42.6=h04a7f16_0
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.4.0=h0003116_16
- gfortran_linux-64=9.4.0=hf0ab688_10
- ghostscript=9.54.0=h27087fc_2
- giflib=5.2.1=h36c2ea0_2
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.49.1=h85b4f2f_0
- gsl=2.7=he838d99_0
- gtk2=2.24.33=h539f30e_1
- gts=0.7.6=h64030ff_2
- gxx_impl_linux-64=9.4.0=h03d3576_16
- gxx_linux-64=9.4.0=h0316aca_10
- h5py=2.10.0=nompi_py38h9915d05_106
- harfbuzz=3.0.0=h83ec7ef_1
- hdf5=1.10.6=nompi_h6a2412b_1114
- hdmedians=0.14.2=py38h71d37f0_2
- icu=68.2=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- imagemagick=7.1.0_10=pl5321hb118871_0
- importlib-metadata=4.11.4=py38h578d9bd_0
- importlib_resources=5.8.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- iow=1.0.5=py38h8ded8fe_0
- ipykernel=6.15.0=pyh210e3f2_0
- ipython=8.4.0=py38h578d9bd_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jedi=0.18.1=py38h578d9bd_1
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- jsonschema=4.6.1=pyhd8ed1ab_0
- jupyter_client=7.3.4=pyhd8ed1ab_0
- jupyter_core=4.10.0=py38h578d9bd_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.3=py38h43d8883_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h7f98852_1001
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=15_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_7
- libbrotlidec=1.0.9=h166bdaf_7
- libbrotlienc=1.0.9=h166bdaf_7
- libcblas=3.9.0=15_linux64_openblas
- libcurl=7.83.1=h7bff187_0
- libdeflate=1.12=h166bdaf_0
- libdrm=2.4.111=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.4.0=hd854feb_16
- libgcc-ng=12.1.0=h8d9b700_16
- libgd=2.3.3=h6ad9fb6_0
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgit2=1.5.0=h6529ace_0
- libglib=2.68.4=h3e27bee_0
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=15_linux64_openblas
- liblapacke=3.9.0=15_linux64_openblas
- libnghttp2=1.47.0=h727a467_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpciaccess=0.16=h516909a_0
- libpng=1.6.37=h21135ba_2
- librsvg=2.52.2=hc3c00ef_0
- libsanitizer=9.4.0=h79bfe98_16
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-devel_linux-64=9.4.0=hd854feb_16
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.4.0=hc85c160_1
- libtool=2.4.6=h9c3ff4c_1008
- libuuid=2.32.1=h7f98852_1000
- libva=2.15.0=h166bdaf_0
- libvpx=1.11.0=h9c3ff4c_3
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h72842e0_0
- libzlib=1.2.12=h166bdaf_1
- lockfile=0.12.2=py_1
- lz4=4.0.0=py38h1bf946c_2
- lz4-c=1.9.3=h9c3ff4c_1
- make=4.3=hd18ef5c_1
- markupsafe=2.1.1=py38h0a891b7_1
- matplotlib-base=3.5.2=py38h826bfd8_0
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- mistune=0.8.4=py38h497a2fe_1005
- mpfr=4.1.0=h9202a9a_1
- msgpack-python=1.0.4=py38h43d8883_0
- munkres=1.1.4=pyh9f0ad1d_0
- natsort=8.1.0=pyhd8ed1ab_0
- nbclient=0.6.6=pyhd8ed1ab_0
- nbconvert=6.5.0=pyhd8ed1ab_0
- nbconvert-core=6.5.0=pyhd8ed1ab_0
- nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
- nbformat=5.4.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.5=pyhd8ed1ab_0
- nettle=3.6=he412f7d_0
- notebook=6.4.12=pyha770c72_0
- numpy=1.22.3=py38h99721a1_2
- openh264=2.1.1=h780b84a_0
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1q=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.2.1=py38ha9443f7_0
- pandoc=2.18=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.48.10=h54213e6_2
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.2=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- perl=5.32.1=2_h7f98852_perl5
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=9.1.1=py38h0ee0e06_1
- pip=22.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- pluggy=1.0.0=py38h578d9bd_3
- prometheus_client=0.14.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.30=pyha770c72_0
- psutil=5.9.1=py38h0a891b7_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- py=1.11.0=pyh6c4a22f_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.12.0=pyhd8ed1ab_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.18.1=py38h0a891b7_1
- pysocks=1.7.1=py38h578d9bd_5
- pytest=7.1.2=py38h578d9bd_0
- python=3.8.8=hffdb5ce_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.15.3=pyhd8ed1ab_0
- python-tzdata=2022.1=pyhd8ed1ab_0
- python_abi=3.8=2_cp38
- pytz=2022.1=pyhd8ed1ab_0
- pytz-deprecation-shim=0.1.0.post0=py38h578d9bd_2
- pyzmq=23.2.0=py38hfc09fa9_0
- r=4.0=r40hd8ed1ab_1004
- r-animation=2.7=r40hc72bb7e_0
- r-ape=5.6_2=r40h43535f1_0
- r-askpass=1.1=r40hcfec24a_2
- r-assertthat=0.2.1=r40hc72bb7e_2
- r-backports=1.4.1=r40hcfec24a_0
- r-base=4.0.5=hb93adac_3
- r-base64enc=0.1_3=r40hcfec24a_1004
- r-bit=4.0.4=r40hcfec24a_0
- r-bit64=4.0.5=r40hcfec24a_0
- r-blob=1.2.3=r40hc72bb7e_0
- r-boot=1.3_28=r40hc72bb7e_0
- r-brew=1.0_7=r40hc72bb7e_0
- r-brio=1.1.3=r40hcfec24a_0
- r-broom=1.0.0=r40hc72bb7e_0
- r-bslib=0.3.1=r40hc72bb7e_0
- r-bwstest=0.2.2=r40h03ef668_1003
- r-cachem=1.0.6=r40hcfec24a_0
- r-callr=3.7.0=r40hc72bb7e_0
- r-caret=6.0_92=r40h06615bd_0
- r-cellranger=1.1.0=r40hc72bb7e_1004
- r-class=7.3_20=r40hcfec24a_0
- r-cli=3.3.0=r40h7525677_0
- r-clipr=0.8.0=r40hc72bb7e_0
- r-cluster=2.1.3=r40h8da6f51_0
- r-clustergeneration=1.3.7=r40ha770c72_0
- r-coda=0.19_4=r40hc72bb7e_0
- r-codetools=0.2_18=r40hc72bb7e_0
- r-colorspace=2.0_3=r40h06615bd_0
- r-combinat=0.0_8=r40hc72bb7e_1003
- r-commonmark=1.8.0=r40h06615bd_0
- r-covr=3.6.1=r40h7525677_0
- r-cpp11=0.4.2=r40hc72bb7e_0
- r-crayon=1.5.1=r40hc72bb7e_0
- r-credentials=1.3.2=r40hc72bb7e_0
- r-crosstalk=1.2.0=r40hc72bb7e_0
- r-crul=1.2.0=r40h785f33e_0
- r-curl=4.3.2=r40hcfec24a_0
- r-data.table=1.14.2=r40hcfec24a_0
- r-dbi=1.1.3=r40hc72bb7e_0
- r-dbplyr=2.2.1=r40hc72bb7e_0
- r-desc=1.4.1=r40hc72bb7e_0
- r-desolve=1.32=r40he5c027b_0
- r-devtools=2.4.3=r40hc72bb7e_0
- r-diffobj=0.3.5=r40hcfec24a_0
- r-digest=0.6.29=r40h03ef668_0
- r-dplyr=1.0.9=r40h7525677_0
- r-dt=0.24=r40hc72bb7e_0
- r-dtplyr=1.2.1=r40hc72bb7e_0
- r-e1071=1.7_11=r40h7525677_0
- r-ellipsis=0.3.2=r40hcfec24a_0
- r-essentials=4.0=r40hd8ed1ab_2002
- r-evaluate=0.15=r40hc72bb7e_0
- r-expm=0.999_6=r40h52d45c5_0
- r-fansi=1.0.3=r40h06615bd_0
- r-farver=2.1.0=r40h03ef668_0
- r-fastmap=1.1.0=r40h03ef668_0
- r-fastmatch=1.1_3=r40hcfec24a_0
- r-fontawesome=0.2.2=r40hc72bb7e_0
- r-forcats=0.5.1=r40hc72bb7e_0
- r-foreach=1.5.2=r40hc72bb7e_0
- r-foreign=0.8_82=r40hcfec24a_0
- r-formatr=1.12=r40hc72bb7e_0
- r-fs=1.5.2=r40h7525677_1
- r-future=1.26.1=r40hc72bb7e_0
- r-future.apply=1.9.0=r40hc72bb7e_0
- r-gargle=1.2.0=r40hc72bb7e_0
- r-geiger=2.0.10=r40h7525677_0
- r-generics=0.1.2=r40hc72bb7e_0
- r-gert=1.5.0=r40h163148b_2
- r-getopt=1.20.3=r40ha770c72_2
- r-ggplot2=3.3.6=r40hc72bb7e_0
- r-gh=1.3.0=r40hc72bb7e_0
- r-gistr=0.9.0=r40hc72bb7e_0
- r-git2r=0.30.1=r40h96773ce_0
- r-gitcreds=0.1.1=r40hc72bb7e_0
- r-glmnet=4.1_2=r40h8da6f51_0
- r-globals=0.15.1=r40hc72bb7e_0
- r-glue=1.6.2=r40h06615bd_0
- r-gmp=0.6_6=r40h7525677_0
- r-googledrive=2.0.0=r40hc72bb7e_0
- r-googlesheets4=1.0.0=r40h785f33e_0
- r-gower=1.0.0=r40hcfec24a_0
- r-gtable=0.3.0=r40hc72bb7e_3
- r-gtools=3.9.2.2=r40h06615bd_0
- r-hardhat=1.2.0=r40hc72bb7e_0
- r-haven=2.5.0=r40h7525677_0
- r-hexbin=1.28.2=r40h8da6f51_0
- r-highr=0.9=r40hc72bb7e_0
- r-hms=1.1.1=r40hc72bb7e_0
- r-htmltools=0.5.2=r40h03ef668_0
- r-htmlwidgets=1.5.4=r40hc72bb7e_0
- r-httpcode=0.3.0=r40ha770c72_1
- r-httpuv=1.6.5=r40h03ef668_0
- r-httr=1.4.3=r40hc72bb7e_0
- r-ids=1.0.1=r40hc72bb7e_1
- r-igraph=1.3.0=r40hf10d5bd_0
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prefix: /data/yangy34/conda/envs/Evolink