linCmt() issues

[mattfidler]

All 3 fail:

modN001  <- nonmem2rx("runN001.ctl",lst=".res", save=FALSE)
modN001b <- nonmem2rx("runN001b.ctl",lst=".res", save=FALSE)
modN001c <- nonmem2rx("runN001c.ctl",lst=".res", save=FALSE)

• The first one doesn’t seem to like $SUBS ADVAN1,TRANS2
• If I recode without TRANS2 (runN001b.ctl) it complains that it is missing a variable w
• If I recode with the additive error fixed to zero (runN001c.ctl) it claims that a variable ‘eps1’ should be available and then that object ‘time’ cannot be found

Data file is Bolus_1CPT from the comparison paper

@RikSchoemaker
runN001x.zip

[mattfidler]

R version:	R version 4.3.1 (2023-06-16 ucrt)
Platform:	x86_64-w64-mingw32
Operating system:	Windows 11 x64 (build 22000)
Attached R packages	Version
babelmixr2	0.1.1
base	4.3.1
cowplot	1.1.1
data.table	1.14.8
datasets	4.3.1
ellipse	0.5.0
graphics	4.3.1
grDevices	4.3.1
grid	4.3.1
hexbin	1.28.3
lattice	0.21-8
latticeExtra	0.6-30
methods	4.3.1
nlmixr2	2.0.9
nlmixr2data	2.0.7
nonmem2rx	0.1.2
RDCOMClient	0.96-1
stats	4.3.1
utils	4.3.1

[mattfidler]

Hi @RikSchoemaker,

With the development version of nonmem2rx, and the fix #164 I can now import the first model.

The second and third model don't complain for me either, so I'm assuming this was fixed somehow in the nonmem2rx unless you are trying to convert to nlmixr2. If that is the case I need a more complete reproducible example