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Hello, I tried to split the beta (hg19) of the cell_WGBS in the paper :
$ wgbstools segment --betas *beta --min_cpg 3 --max_bp 2000 -o blocks.small.bed
The following error occurred:
[wt beta] WARNING: beta file size (28,587,300 sites)
incomatible with current genome reference (28,217,448 sites)
Invalid input argument
[wt segment] ERROR: current genome reference (hg19) does not match the input beta file (GSM5652208_Coronary-Artery-Smooth-Muscle-Z00000420.beta).
How can I solve it?
Thanks
The text was updated successfully, but these errors were encountered:
chang-bwl
changed the title
segment sites incomatible
segment sites mismatch
Mar 29, 2024
Hello, I tried to split the beta (hg19) of the cell_WGBS in the paper :
$ wgbstools segment --betas *beta --min_cpg 3 --max_bp 2000 -o blocks.small.bed
The following error occurred:
[wt beta] WARNING: beta file size (28,587,300 sites)
incomatible with current genome reference (28,217,448 sites)
Invalid input argument
[wt segment] ERROR: current genome reference (hg19) does not match the input beta file (GSM5652208_Coronary-Artery-Smooth-Muscle-Z00000420.beta).
How can I solve it?
Thanks
The text was updated successfully, but these errors were encountered: