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segment sites mismatch #64

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chang-bwl opened this issue Mar 29, 2024 · 1 comment
Open

segment sites mismatch #64

chang-bwl opened this issue Mar 29, 2024 · 1 comment

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@chang-bwl
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Hello, I tried to split the beta (hg19) of the cell_WGBS in the paper :
$ wgbstools segment --betas *beta --min_cpg 3 --max_bp 2000 -o blocks.small.bed

The following error occurred:
[wt beta] WARNING: beta file size (28,587,300 sites)
incomatible with current genome reference (28,217,448 sites)
Invalid input argument
[wt segment] ERROR: current genome reference (hg19) does not match the input beta file (GSM5652208_Coronary-Artery-Smooth-Muscle-Z00000420.beta).

How can I solve it?
Thanks

@chang-bwl chang-bwl changed the title segment sites incomatible segment sites mismatch Mar 29, 2024
@chang-bwl
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I've finally solved this problem.It's because wget -c downloads have some extra lines in the download file, which causes the CSI to lag

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