Skip to content

Latest commit

 

History

History
12 lines (10 loc) · 778 Bytes

README.md

File metadata and controls

12 lines (10 loc) · 778 Bytes
Raw

Preproc_Effects

Hosted scripts for building templates and template priors, pre-processing data, extracting ROI volumes, and running a tensor-based morphometric analysis.

Basic Notes:

  1. Scripts that start with "MT" are used for creating a template.
  2. Scripts that start with "PP" are used in the pre-processing pipeline.
  3. Scripts are numbered (e.g. *_1.sh, *_2.sh) to indicate their respective step in the pipeline.
  4. Sbatch scripts are written for a slurm environment, and are wrapped with submit_sbatch scripts.

Citation: Muncy NM, Hedges-Muncy AM, Kirwan CB (2017) Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images. PLOS ONE 12(10): e0186071. https://doi.org/10.1371/journal.pone.0186071