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Issue trying to install libact on MacOS Catalina #170

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RicardoJMPaiva opened this issue Nov 5, 2019 · 4 comments
Closed

Issue trying to install libact on MacOS Catalina #170

RicardoJMPaiva opened this issue Nov 5, 2019 · 4 comments

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@RicardoJMPaiva
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I'm trying to install libact on my computer using the following tutorial:
https://pypi.org/project/libact/
I'm using python version 2.7.17 because i've tried using a newer version of python 3 but this one produces other issues.
When i type the command to install libact ("pip install --user libact") (after installing all dependencies) i have an issue related to "lapacke.h" file. I've already tried to copy this file and the "lapacke_config.h" file to the libact directory but the error persists.
The full error message is presented below.
Thanks for the help.

`Collecting libact
Using cached https://files.pythonhosted.org/packages/4b/8c/1f57cbe9e6b647afa14f8446c20caa2343fa26153be179e5a89060cd6ec2/libact-0.1.6.tar.gz
Requirement already satisfied: setuptools in /usr/local/lib/python2.7/site-packages (from libact) (41.4.0)
Requirement already satisfied: numpy in /usr/local/lib/python2.7/site-packages (from libact) (1.16.5)
Requirement already satisfied: scipy in /usr/local/lib/python2.7/site-packages (from libact) (1.2.2)
Requirement already satisfied: scikit-learn<=0.19.2 in /usr/local/lib/python2.7/site-packages (from libact) (0.19.2)
Requirement already satisfied: matplotlib in /usr/local/lib/python2.7/site-packages (from libact) (2.2.4)
Requirement already satisfied: Cython in /usr/local/lib/python2.7/site-packages (from libact) (0.29.14)
Requirement already satisfied: joblib in /usr/local/lib/python2.7/site-packages (from libact) (0.14.0)
Requirement already satisfied: python-dateutil>=2.1 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (2.8.1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (2.4.3)
Requirement already satisfied: pytz in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (2019.3)
Requirement already satisfied: backports.functools-lru-cache in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (1.6.1)
Requirement already satisfied: six>=1.10 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (1.12.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (0.10.0)
Requirement already satisfied: subprocess32 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (3.5.4)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python2.7/site-packages (from matplotlib->libact) (1.1.0)
Building wheels for collected packages: libact
Building wheel for libact (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python@2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"'; file='"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-wheel-YCK8Iv --python-tag cp27
cwd: /private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/
Complete output (73 lines):
Platform Detection: Mac OS X. Link to openblas...
Build VarianceReduction...
Build HintSVM...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.15-x86_64-2.7
creating build/lib.macosx-10.15-x86_64-2.7/libact
copying libact/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact
creating build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/interfaces.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/dataset.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
creating build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/perceptron.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/sklearn_adapter.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/logistic_regression.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/svm.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
creating build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/binary_relevance.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/dummy_clf.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
creating build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/ideal_labeler.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/interactive_labeler.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/random_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/hintsvm.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/quire.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/active_learning_by_learning.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/variance_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/query_by_committee.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/density_weighted_meta.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/density_weighted_uncertainty_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/uncertainty_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/cost_sensitive_reference_pair_encoding.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/maximum_margin_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/binary_minimization.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/multilabel_with_auxiliary_learner.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/adaptive_active_learning.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/expected_error_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/mdsp.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/active_learning_with_cost_embedding.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/hierarchical_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
creating build/lib.macosx-10.15-x86_64-2.7/libact/utils
copying libact/utils/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/utils
running build_ext
building 'libact.query_strategies._variance_reduction' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules _winreg, win32api or win32con are installed.
C compiler: clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating build/temp.macosx-10.15-x86_64-2.7
creating build/temp.macosx-10.15-x86_64-2.7/libact
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src/variance_reduction
compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
extra options: '-std=c11'
clang: libact/query_strategies/src/variance_reduction/variance_reduction.c
libact/query_strategies/src/variance_reduction/variance_reduction.c:5:10: fatal error: 'lapacke.h' file not found
#include <lapacke.h>
^~~~~~~~~~~
1 error generated.
error: Command "clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libact/query_strategies/src/variance_reduction/variance_reduction.c -o build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src/variance_reduction/variance_reduction.o -std=c11" failed with exit status 1

ERROR: Failed building wheel for libact
Running setup.py clean for libact
Failed to build libact
Installing collected packages: libact
Running setup.py install for libact ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python@2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"'; file='"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-record-rKZUWh/install-record.txt --single-version-externally-managed --compile --user --prefix=
cwd: /private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/
Complete output (73 lines):
Platform Detection: Mac OS X. Link to openblas...
Build VarianceReduction...
Build HintSVM...
running install
running build
running build_py
creating build
creating build/lib.macosx-10.15-x86_64-2.7
creating build/lib.macosx-10.15-x86_64-2.7/libact
copying libact/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact
creating build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/interfaces.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
copying libact/base/dataset.py -> build/lib.macosx-10.15-x86_64-2.7/libact/base
creating build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/perceptron.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/sklearn_adapter.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/logistic_regression.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
copying libact/models/svm.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models
creating build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/binary_relevance.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
copying libact/models/multilabel/dummy_clf.py -> build/lib.macosx-10.15-x86_64-2.7/libact/models/multilabel
creating build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/ideal_labeler.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
copying libact/labelers/interactive_labeler.py -> build/lib.macosx-10.15-x86_64-2.7/libact/labelers
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/random_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/hintsvm.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/quire.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/active_learning_by_learning.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/variance_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/query_by_committee.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/density_weighted_meta.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/density_weighted_uncertainty_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
copying libact/query_strategies/uncertainty_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/cost_sensitive_reference_pair_encoding.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/maximum_margin_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/binary_minimization.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/multilabel_with_auxiliary_learner.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
copying libact/query_strategies/multilabel/adaptive_active_learning.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multilabel
creating build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/expected_error_reduction.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/mdsp.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/active_learning_with_cost_embedding.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
copying libact/query_strategies/multiclass/hierarchical_sampling.py -> build/lib.macosx-10.15-x86_64-2.7/libact/query_strategies/multiclass
creating build/lib.macosx-10.15-x86_64-2.7/libact/utils
copying libact/utils/init.py -> build/lib.macosx-10.15-x86_64-2.7/libact/utils
running build_ext
building 'libact.query_strategies._variance_reduction' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules _winreg, win32api or win32con are installed.
C compiler: clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating build/temp.macosx-10.15-x86_64-2.7
creating build/temp.macosx-10.15-x86_64-2.7/libact
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src
creating build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src/variance_reduction
compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
extra options: '-std=c11'
clang: libact/query_strategies/src/variance_reduction/variance_reduction.c
libact/query_strategies/src/variance_reduction/variance_reduction.c:5:10: fatal error: 'lapacke.h' file not found
#include <lapacke.h>
         ^~~~~~~~~~~
1 error generated.
error: Command "clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libact/query_strategies/src/variance_reduction/variance_reduction.c -o build/temp.macosx-10.15-x86_64-2.7/libact/query_strategies/src/variance_reduction/variance_reduction.o -std=c11" failed with exit status 1
----------------------------------------

ERROR: Command errored out with exit status 1: /usr/local/opt/python@2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"'; file='"'"'/private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-install-4FxfDB/libact/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/53/ksln0nrd5pqd2y7dtxzmlx680000gn/T/pip-record-rKZUWh/install-record.txt --single-version-externally-managed --compile --user --prefix= Check the logs for full command output.`
@yangarbiter
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yangarbiter commented Nov 6, 2019 •
edited

Have you install openblas?

brew install openblas

@RicardoJMPaiva
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Yes, i've followed every step in the tutorial, including installing the openblas. But when i try to run the installation command, the error presented above persists. I've tried installing throughout github but the message is the same.
Hope that you can help me with this one!
Thanks

@yangarbiter
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yangarbiter commented Nov 6, 2019 •
edited

Do you intend to use variance reduction or hintsvm?
if not, set the installation options to not install them should fix the issue.
https://github.com/ntucllab/libact#installation-options

If you want to install them, try adding the directory of lapacke.h to your PATH environment variable

@RicardoJMPaiva
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It worked. Thanks

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