Install and start running

[RFTHK]

Hi,

I'd like to use your psichomics visual interface, but can not install and start the program because of the following message.
I am using Windows and RStudio version 4.1.0 (2021-05-18). What is the problem?

library(psichomics)
Loading required package: shiny
Loading required package: shinyBS
Registered S3 method overwritten by 'quantmod':
method from
as.zoo.data.frame zoo
Error: package or namespace load failed for ‘psichomics’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘org.Hs.eg.db’
psichomics()
Error in psichomics() : could not find function "psichomics"

Ryo

[nuno-agostinho]

Hey Ryo, what version of psichomics do you have installed? You can check with packageVersion("psichomics"). Please try to update to the latest version.

You can also manually install org.Hs.eg.db via BiocManager::install("org.Hs.eg.db"), although this package is no longer a dependency in the newest version of psichomics.

Please let me know if this solves your issues or not. Cheers!

[RFTHK]

Thank you very much for your quick response. The version is 1.17.0. (installed on 2021/05/21).

packageVersion("psichomics")
[1] ‘1.17.0’

Manual installation of org.Hs.eg.db could not improve the problem...

Ryo

[nuno-agostinho]

Okay, so there is a 1.18.0 version of psichomics. Could you try to update to this version using Bioconductor?

BiocManager::install("psichomics")

If that doesn't install the 1.18.0 version, please try to install the latest version directly from GitHub with:

install.packages("remotes"); remotes::install_github("nuno_agostinho/psichomics", ref="master")

[RFTHK]

I have installed and started psichomics version 1.17.0, although a version 1.18.0 cannot be installed in my Windows environment.
I will proceed my analysis with 1.17.0. Thank you very much for creating such a great program and for your kind help.

Ryo