statistical test kit

examples/GA/batch_submit.rb

@@ -8,23 +8,30 @@
 ret = []
 
 [2,1,0].each{|instance|
-  [true,false].each{|triang|
-    [true,false].each{|island|
+  ['no3','on3','333'].each{|triang|
+    [false].each{|island|
       tag = ''
-      tag += if triang then '-wt' else '-nt' end
-      tag += if island then 'i' else 'c' end
+      tag += '-'+triang
+      tag += if island then '-i' else '-c' end
       tag += "-#{instance}"
 
-      dir = '/data0/t2g-ppc-all/nushio/GACT' + tag
+      dir = '/data0/t2g-ppc-all/nushio/GACC' + tag
 
-      no3 = ''
-      no3 = '--no3' unless triang
+      no3 = '--' + triang
 
       islandFlag = ''
       islandFlag = '--island' if island
 
-      # job = ''
-      # job = '-i genomeBank/Izanami-Gen2.dna'
+
+      #job = '-i genomeBank/Izanami-Gen2.dna'
+      #ret << "./make_task.rb -w #{dir} #{no3} #{job} #{islandFlag}"
+      #job = '-i genomeBank/Shinatsuhiko-Gen2.dna'
+      #ret << "./make_task.rb -w #{dir} #{no3} #{job} #{islandFlag}"
+      #job = '-i genomeBank/Hayaakitsuhime-Gen2.dna'
+      #ret << "./make_task.rb -w #{dir} #{no3} #{job} #{islandFlag}"
+      #job = '-i genomeBank/Iwatsuchibiko-Gen2.dna'
+      #ret << "./make_task.rb -w #{dir} #{no3} #{job} #{islandFlag}"
+
       job = "-n 10 -s stat#{tag}"
       ret << "./make_task.rb -w #{dir} #{no3} #{job} #{islandFlag}"
     }

examples/GA/make_task.rb

@@ -54,9 +54,15 @@ def choice_by()
 
 $mutateProb = 0.33333333333333
 $crossProb  = 0.33333333333333
+opt.on('--333') {
+}
 opt.on('--no3') {
-  $mutateProb = 0.5
-  $crossProb  = 0.5
+  $mutateProb = 0.33333333
+  $crossProb  = 0.66666667
+}
+opt.on('--on3') {
+  $mutateProb = 0.33333333
+  $crossProb  = 0.0
 }
 
 
@@ -144,7 +150,7 @@ def initialize()
 
   def loadSpecies(id, dir)
     begin
-      return @record[id] if id < @record.length - 30
+      return @record[id] if id < @record.length - 50
 
       ret = Species.new
       ret.id = id