Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NTR: Phytoplankton terms #33

Closed
roswri opened this issue Jan 12, 2023 · 3 comments
Closed

NTR: Phytoplankton terms #33

roswri opened this issue Jan 12, 2023 · 3 comments

Comments

@roswri
Copy link

roswri commented Jan 12, 2023

New S25s required for P01 request: nvs-vocabs/P01#186
Eucampia zodiacus f. cylindrocornis (WoRMS 553584)
Lennoxia faveolata (WoRMS 549205)
Bacillariophyceae (WoRMS 148899) [Size: 10-40um Morphology: Pennate]
Bacillariophyceae (WoRMS 148899) [Size: 40-80um Morphology: Pennate]
Bacillariophyceae (WoRMS 148899) [Size: >80um Morphology: Pennate]
Proboscia indica (WoRMS 345513)
Achradina pulchra (WoRMS 109716)
Achradina sulcata (WoRMS 576930)
Amphidinium stigmatum (WoRMS 109756)
Brachidinium capitatum (WoRMS 232115)
Tripos bigelowii (WoRMS 841188)
Ceratium declinatum var. angusticornum (WoRMS 847295)
Ceratium fusus var. fusus (WoRMS 422703)
Ceratium fusus var. seta (WoRMS 422704)
Ceratium fusus var. schuettii (WoRMS 597653)
Ceratium macroceros var. macroceros (WoRMS 422710)
Gonyaulax birostris (WoRMS 110011)
Gonyaulax digitale (WoRMS 110015)
Balechina coerulea (WoRMS 232737)
Gyrodinium britannicum (WoRMS 109843)
Karenia brevis (WoRMS 233015)
Karenia bicuneiformis (WoRMS 233014)
Karenia papilionacea (WoRMS 246593)
Karenia (WoRMS 231788) [Size: <20um]
Karenia (WoRMS 231788) [Size: >20um]
Lessardia elongata (WoRMS 232703)
Lingulodinium polyedra (WoRMS 233592)
Oxytoxum adriaticum (WoRMS 110079)
Oxytoxum coronatum (WoRMS 110086)
Oxytoxum curvatum (WoRMS 110090)
Oxytoxum longiceps (WoRMS 110099)
Oxytoxum punctulatum (WoRMS 110110)
Prorocentrum dactylus (WoRMS 110297)
Prorocentrum vaginula (WoRMS 232300)
Pyrocystis robusta (WoRMS 110334)
Scrippsiella + Pentapharsodinium + Ensiculifera
Dinoflagellata (WoRMS 146203) [Size: 10um Morphology: athecate]
Histioneis inclinata (WoRMS 109674)
Histioneis oxypteris (WoRMS 109679)
Histioneis variabilis (WoRMS 109686)
Azadinium caudatum (WoRMS 837075)
Azadinium caudatum var. margalefii (WoRMS 846290)
Margalefidinium catenatum (WoRMS 990878)
Cochlodinium lebourae (WoRMS 232668)
Corythodinium constrictum (WoRMS 248059)
Erythropsidinium agile (WoRMS 109905)
Kofoidinium pavillardii (WoRMS 109918)
Nematodinium torpedo (WoRMS 233113)
Podolampas spinifera (WoRMS 110202)
Protoperidinium curtipes+Protoperidinium crassipes (WoRMS 110215/110214)
Protoperidinium (WoRMS 109553) [Size: medium]
Protoperidinium globulus (WoRMS 232921)
Protoperidinium cerasus+Protoperidinium minutum(WoRMS 162749/110233)
Oscillatoria limosa (WoRMS 146554)
Oscillatoria tenuis var tenuis
Trichodesmium erythraeum (WoRMS 660919)
Pterosperma cristatum (WoRMS 376081)
Pterosperma undulatum (WoRMS 376084)
Prymnesiophyceae (WoRMS 115057) [Size: 10-25um Subcomponent: Coccospheres]
Calcidiscus leptoporus subsp. quadriperforatus (WoRMS 555946)
Discosphaera tubifera+Papposphaera lepida (WoRMS 573399/235968)
Emiliania huxleyi + Gephyrocapsa + coccospheres (5um) (WoRMS 115104/235823)
Syracosphaera + Coronosphaera [Stage: holococcolithophorid ]
Oolithotus fragilis+Oolithotus antillarum (WoRMS 235856)
Ophiaster hydroides+Ophiaster formosus (WoRMS 115099/235964)
Syracosphaera prolongata + Syracosphaera pirus (WoRMS )
Bacillariophyceae (WoRMS 148899) [Size: diameter 10-20um Morphology: centric]
Bacillariophyceae (WoRMS 148899) [Size: diameter 30-40um Morphology: centric]
Bacillariophyceae (WoRMS 148899) [Size: diameter >40um Morphology: centric]
Chaetoceros messanense (WoRMS 418509)

@roswri
Copy link
Author

roswri commented Jul 24, 2023

New terms created:
BE009862 | Achradina sulcata (WoRMS 576930)
BE009863 | Amphidinium stigmatum (WoRMS 109756)
BE009864 | Azadinium caudatum (WoRMS 837075)
BE009865 | Azadinium caudatum var. margalefii (WoRMS 846290)
BE009867 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: 10-40um Morphology: pennate]
BE009868 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: 40-80um Morphology: pennate]
BE009866 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: >80um Morphology: pennate]
BE009870 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: diameter 10-20um Morphology: centric]
BE009871 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: diameter 30-40um Morphology: centric]
BE009869 | Bacillariophyceae (ITIS: 2287: WoRMS 148899) [Size: diameter >40um Morphology: centric]
BE009872 | Balechina coerulea (WoRMS 232737)
BE009873 | Brachidinium capitatum (WoRMS 232115)
BE009874 | Calcidiscus leptoporus subsp. quadriperforatus (WoRMS 555946)
BE009875 | Ceratium declinatum var. angusticornum (WoRMS 847295)
BE009876 | Ceratium fusus var. fusus (WoRMS 422703)
BE009877 | Ceratium fusus var. schuettii (WoRMS 597653)
BE009878 | Ceratium fusus var. seta (WoRMS 422704)
BE009879 | Ceratium macroceros var. macroceros (WoRMS 422710)
BE009880 | Chaetoceros messanense (WoRMS 418509)
BE009881 | Cochlodinium lebourae (WoRMS 232668)
BE009882 | Corythodinium constrictum (WoRMS 248059)
BE009883 | Dinoflagellates (ITIS: 9873: WoRMS 19542) [Size: 10um Morphology: athecate]
BE009884 | Discosphaera tubifera + Papposphaera lepida (ITIS: 2134: WoRMS 369190)
BE009885 | Emiliania huxleyi + Gephyrocapsa + coccospheres (WoRMS 146200)
BE009886 | Erythropsidinium agile (ITIS: 573529: WoRMS 109905)
BE009887 | Eucampia zodiacus f. cylindrocornis (WoRMS 553584)
BE009888 | Gonyaulax birostris (ITIS: 10376: WoRMS 110011)
BE009889 | Gonyaulax digitale (ITIS: 573390: WoRMS 110015)
BE009890 | Gyrodinium britannicum (WoRMS 109843)
BE009891 | Histioneis inclinata (WoRMS 109674)
BE009892 | Histioneis oxypteris (ITIS: 573434: WoRMS 109679)
BE009893 | Histioneis variabilis (ITIS: 573438: WoRMS 109686)
BE009894 | Karenia (WoRMS 231788) [Size: <20um]
BE009895 | Karenia (WoRMS 231788) [Size: >20um]
BE009896 | Karenia bicuneiformis (WoRMS 233014)
BE009897 | Karenia brevis (WoRMS 233015)
BE009898 | Karenia papilionacea (WoRMS 246593)
BE009899 | Kofoidinium pavillardii (WoRMS 109918)
BE009900 | Lennoxia faveolata (WoRMS 549205)
BE009901 | Lessardia elongata (WoRMS 232703)
BE009902 | Lingulodinium polyedra (WoRMS 233592)
BE009903 | Margalefidinium catenatum (WoRMS 990878)
BE009904 | Nematodinium torpedo (ITIS: 550531: WoRMS 233113)
BE009905 | Oolithotus fragilis + Oolithotus antillarum (ITIS: 610062: WoRMS 235856)
BE009906 | Ophiaster hydroides + Ophiaster formosus (ITIS: 2222: WoRMS 115081)
BE009907 | Oscillatoria limosa (ITIS: 976: WoRMS 146554)
BE009908 | Oscillatoria tenuis var. tenuis (ITIS: 955)
BE009909 | Oxytoxum adriaticum (WoRMS 110079)
BE009910 | Oxytoxum coronatum (ITIS: 10477: WoRMS 110086)
BE009911 | Oxytoxum curvatum (ITIS: 550532: WoRMS 110090)
BE009912 | Oxytoxum longiceps (ITIS: 10467: WoRMS 110099)
BE009913 | Oxytoxum punctulatum (WoRMS 110110)
BE009914 | Podolampas spinifera (WoRMS 110202)
BE009915 | Proboscia indica (WoRMS 345513)
BE009916 | Prorocentrum dactylus (ITIS: 9915: WoRMS 110297)
BE009917 | Prorocentrum vaginula (WoRMS 232300)
BE009918 | Protoperidinium (ITIS: 10340: WoRMS 109553) [Size: medium]
BE009919 | Protoperidinium cerasus + Protoperidinium minutum (ITIS: 10340: WoRMS 109553)
BE009920 | Protoperidinium curtipes + Protoperidinium crassipes (ITIS: 10340: WoRMS 109553)
BE009921 | Protoperidinium globulus (WoRMS 232921)
BE009922 | Prymnesiophyceae (ITIS: 2135: WoRMS 115057) [Size: 10-25um Subcomponent: coccospheres]
BE009923 | Pterosperma cristatum (WoRMS 376081)
BE009924 | Pterosperma undulatum (WoRMS 376084)
BE009925 | Pyrocystis robusta (WoRMS 110334)
BE009926 | Scrippsiella + Pentapharsodinium + Ensiculifera (WoRMS 493993)
BE009927 | Syracosphaera + Coronosphaera (ITIS: 2186: WoRMS 146199) [Stage: holococcolithophorid]
BE009928 | Syracosphaera prolongata + Syracosphaera pirus (ITIS: 2234: WoRMS 115084)
BE009929 | Trichodesmium erythraeum (WoRMS 660919)
BE009930 | Tripos bigelowii (WoRMS 841188)

@roswri
Copy link
Author

roswri commented Jul 24, 2023

Since only one AphiaID/ITIS_TSN is allowed within the codnam, terms with multiple taxa grouped together e.g. Syracosphaera + Coronosphaera, Protoperidinium curtipes + Protoperidinium crassipes, etc. have been linked to the narrowest taxonomic hierarchy level that encompasses all groups/species mentioned.
Specific AphiaIDs have been mapped to these bioentrfs in urlmap_ext

@roswri
Copy link
Author

roswri commented Jul 25, 2023

Terms live on NVS:
http://vocab.nerc.ac.uk/collection/S25/current/BE009861
http://vocab.nerc.ac.uk/collection/S25/current/BE009862
http://vocab.nerc.ac.uk/collection/S25/current/BE009863
http://vocab.nerc.ac.uk/collection/S25/current/BE009864
http://vocab.nerc.ac.uk/collection/S25/current/BE009865
http://vocab.nerc.ac.uk/collection/S25/current/BE009867
http://vocab.nerc.ac.uk/collection/S25/current/BE009868
http://vocab.nerc.ac.uk/collection/S25/current/BE009866
http://vocab.nerc.ac.uk/collection/S25/current/BE009870
http://vocab.nerc.ac.uk/collection/S25/current/BE009871
http://vocab.nerc.ac.uk/collection/S25/current/BE009869
http://vocab.nerc.ac.uk/collection/S25/current/BE009872
http://vocab.nerc.ac.uk/collection/S25/current/BE009873
http://vocab.nerc.ac.uk/collection/S25/current/BE009874
http://vocab.nerc.ac.uk/collection/S25/current/BE009875
http://vocab.nerc.ac.uk/collection/S25/current/BE009876
http://vocab.nerc.ac.uk/collection/S25/current/BE009877
http://vocab.nerc.ac.uk/collection/S25/current/BE009878
http://vocab.nerc.ac.uk/collection/S25/current/BE009879
http://vocab.nerc.ac.uk/collection/S25/current/BE009880
http://vocab.nerc.ac.uk/collection/S25/current/BE009881
http://vocab.nerc.ac.uk/collection/S25/current/BE009882
http://vocab.nerc.ac.uk/collection/S25/current/BE009883
http://vocab.nerc.ac.uk/collection/S25/current/BE009884
http://vocab.nerc.ac.uk/collection/S25/current/BE009885
http://vocab.nerc.ac.uk/collection/S25/current/BE009886
http://vocab.nerc.ac.uk/collection/S25/current/BE009887
http://vocab.nerc.ac.uk/collection/S25/current/BE009888
http://vocab.nerc.ac.uk/collection/S25/current/BE009889
http://vocab.nerc.ac.uk/collection/S25/current/BE009890
http://vocab.nerc.ac.uk/collection/S25/current/BE009891
http://vocab.nerc.ac.uk/collection/S25/current/BE009892
http://vocab.nerc.ac.uk/collection/S25/current/BE009893
http://vocab.nerc.ac.uk/collection/S25/current/BE009894
http://vocab.nerc.ac.uk/collection/S25/current/BE009895
http://vocab.nerc.ac.uk/collection/S25/current/BE009896
http://vocab.nerc.ac.uk/collection/S25/current/BE009897
http://vocab.nerc.ac.uk/collection/S25/current/BE009898
http://vocab.nerc.ac.uk/collection/S25/current/BE009899
http://vocab.nerc.ac.uk/collection/S25/current/BE009900
http://vocab.nerc.ac.uk/collection/S25/current/BE009901
http://vocab.nerc.ac.uk/collection/S25/current/BE009902
http://vocab.nerc.ac.uk/collection/S25/current/BE009903
http://vocab.nerc.ac.uk/collection/S25/current/BE009904
http://vocab.nerc.ac.uk/collection/S25/current/BE009905
http://vocab.nerc.ac.uk/collection/S25/current/BE009906
http://vocab.nerc.ac.uk/collection/S25/current/BE009907
http://vocab.nerc.ac.uk/collection/S25/current/BE009908
http://vocab.nerc.ac.uk/collection/S25/current/BE009909
http://vocab.nerc.ac.uk/collection/S25/current/BE009910
http://vocab.nerc.ac.uk/collection/S25/current/BE009911
http://vocab.nerc.ac.uk/collection/S25/current/BE009912
http://vocab.nerc.ac.uk/collection/S25/current/BE009913
http://vocab.nerc.ac.uk/collection/S25/current/BE009914
http://vocab.nerc.ac.uk/collection/S25/current/BE009915
http://vocab.nerc.ac.uk/collection/S25/current/BE009916
http://vocab.nerc.ac.uk/collection/S25/current/BE009917
http://vocab.nerc.ac.uk/collection/S25/current/BE009918
http://vocab.nerc.ac.uk/collection/S25/current/BE009919
http://vocab.nerc.ac.uk/collection/S25/current/BE009920
http://vocab.nerc.ac.uk/collection/S25/current/BE009921
http://vocab.nerc.ac.uk/collection/S25/current/BE009922
http://vocab.nerc.ac.uk/collection/S25/current/BE009923
http://vocab.nerc.ac.uk/collection/S25/current/BE009924
http://vocab.nerc.ac.uk/collection/S25/current/BE009925
http://vocab.nerc.ac.uk/collection/S25/current/BE009926
http://vocab.nerc.ac.uk/collection/S25/current/BE009927
http://vocab.nerc.ac.uk/collection/S25/current/BE009928
http://vocab.nerc.ac.uk/collection/S25/current/BE009929
http://vocab.nerc.ac.uk/collection/S25/current/BE009930

@roswri roswri closed this as completed Jul 25, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant