Merged pull requests:
- add ChIP-Seq tutorial #68 (vaofford)
- RNA-Seq PDF updates for SA 2019 #67 (vaofford)
- RNA-Seq updates for SA 2019 #66 (vaofford)
NGS_oct_2018 (2018-09-26)
Merged pull requests:
- 631419 unix #65 (ssjunnebo)
- Igv pdf changes #64 (vaofford)
- Admin script updates to allow for RNA-Seq conversion #63 (vaofford)
- 632235 qc edits #62 (ssjunnebo)
- Update index with PathFind (pf) script tutorial #61 (vaofford)
- Add tutorial for PathFind (pf) scripts #60 (vaofford)
- fix incorrect docker image name #59 (ssjunnebo)
- 621737 docker #58 (ssjunnebo)
- Dockerfile - works only for Unix tutorial #57 (ssjunnebo)
- add azure startup scripts to unix and blast notebooks #56 (vaofford)
- Move deago guide #55 (vaofford)
- Update RNA-Seq tutorial #54 (vaofford)
PITraining_July_2018 (2018-07-27)
Merged pull requests:
- Minor updates and fixed typos #53 (jacquikeane)
- Minor updates to QC tutorial #52 (jacquikeane)
- Updated titles of notebooks #51 (jacquikeane)
- add RNA-Seq tutorial and update index #50 (vaofford)
- Minor update to repository introduction #49 (jacquikeane)
- fix minor issues #48 (ssjunnebo)
- Small rephrasing #47 (ssjunnebo)
- 621738 qc tutorial #46 (ssjunnebo)
- remove output and add author #45 (ssjunnebo)
- 618996 roary tutorial #44 (ssjunnebo)
- 618996 update intro #43 (ssjunnebo)
- change cells with type raw to markdown #42 (vaofford)
- update readme format #41 (ssjunnebo)
- Deago tutorial #40 (vaofford)
NGS_feb_2018 (2017-12-13)
Merged pull requests:
- hide answers #39 (ssjunnebo)
- fix typos #38 (ssjunnebo)
- 582449 update seorba tutorial #37 (ssjunnebo)
NGS_oct_2017 (2017-08-24)
Merged pull requests:
- include bundled db #36 (ssjunnebo)
- Add notebook for SeroBA tutorial #35 (ssjunnebo)
- update AUTHORS and LICENSE #33 (ssjunnebo)
- add AUTHORS file #32 (ssjunnebo)
- Ariba tutorial #31 (martinghunt)
- Add section index to BLAST tutorial #30 (vaofford)
- Blast tutorial #29 (vaofford)
- BLAST tutorial #28 (vaofford)
NGS_oct_2016 (2016-09-27)
Merged pull requests:
- Fix make pdf #27 (martinghunt)
- Ngs 2016 grep awk scripts #26 (martinghunt)
- Updates to basic and files section for the NGS Bioinformatics 2016 course #25 (jacquikeane)
Pathogen_Genomes_2016 (2015-12-21)
Merged pull requests:
- Assorted cosmetic changes to Unix manual #24 (bewt85)
- Minor change to paths in Unix course #23 (bewt85)
- Tidy pdf #22 (martinghunt)
- UNIX updates; add cheat sheet #21 (bewt85)
- Tidy pdf #20 (martinghunt)
NGS_nov_2015 (2015-11-18)
Merged pull requests:
- Added missing directories #19 (jacquikeane)
- New line to make tex conversion work #18 (martinghunt)
- fix grep commands #17 (martinghunt)
- Fixed typos; Replace tutorial with course #16 (jacquikeane)
- Fix dash character #15 (martinghunt)
- Added final data and instructions to each part for following in a terminal window #14 (jacquikeane)
- Add instructions for how to follow in a terminal #13 (martinghunt)
- Tab example not as code cell; add head and tail to sort #12 (martinghunt)
- fix typos. Do not run commands with big output #11 (martinghunt)
- Corrected errors in exercises and added formatting to commands #10 (jacquikeane)
- Finalise basic module and clear the output from basic and files module #9 (jacquikeane)
- Finalising the data and notebook for files part of course #8 (jacquikeane)
- Remove all cell output #7 (martinghunt)
- move unix description; add gitignore files #6 (martinghunt)
- Add little description of jupyter notebooks #5 (martinghunt)
- Added notebooks for basic commands and file commands #4 (jacquikeane)
- Git clone sanger-pathogens, not martinghunt #3 (martinghunt)
- Typo fix #2 (martinghunt)
- Initial commit #1 (martinghunt)